Hb_004933_010

Information

Type -
Description -
Location Contig4933: 34710-35276
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10810g
description POPTRDRAFT_578669; hypothetical protein
nr
ID XP_002325095.1
description hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
swissprot
ID Q7XR02
description Transcription factor IBH1 OS=Oryza sativa subsp. japonica GN=IBH1 PE=1 SV=2
trembl
ID B9IM63
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10810g PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor ibh1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45372: 34124-35442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004933_010 0.0 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
2 Hb_001635_140 0.092145774 - - protein with unknown function [Ricinus communis]
3 Hb_011628_010 0.0937735167 - - tonoplast intrinsic protein, putative [Ricinus communis]
4 Hb_002228_120 0.0948947206 - - potassium channel beta, putative [Ricinus communis]
5 Hb_000413_120 0.1005946977 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
6 Hb_000333_140 0.1056643983 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_015292_020 0.1068873442 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_007477_010 0.1086820704 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
9 Hb_001136_080 0.1133945278 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
10 Hb_009367_070 0.1143979181 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
11 Hb_001709_120 0.1171844954 - - hypothetical protein RCOM_1313640 [Ricinus communis]
12 Hb_000185_180 0.1173960398 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
13 Hb_000666_040 0.1180124624 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
14 Hb_000815_010 0.118726234 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
15 Hb_009662_040 0.1221281686 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
16 Hb_001141_270 0.1229726673 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
17 Hb_000207_060 0.1242967951 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
18 Hb_002902_060 0.1244780664 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
19 Hb_004112_080 0.1267070921 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
20 Hb_006483_070 0.1267841015 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004933_010 Hb_004933_010 Hb_001635_140 Hb_001635_140 Hb_004933_010--Hb_001635_140 Hb_011628_010 Hb_011628_010 Hb_004933_010--Hb_011628_010 Hb_002228_120 Hb_002228_120 Hb_004933_010--Hb_002228_120 Hb_000413_120 Hb_000413_120 Hb_004933_010--Hb_000413_120 Hb_000333_140 Hb_000333_140 Hb_004933_010--Hb_000333_140 Hb_015292_020 Hb_015292_020 Hb_004933_010--Hb_015292_020 Hb_001635_140--Hb_011628_010 Hb_004705_060 Hb_004705_060 Hb_001635_140--Hb_004705_060 Hb_009367_070 Hb_009367_070 Hb_001635_140--Hb_009367_070 Hb_000207_060 Hb_000207_060 Hb_001635_140--Hb_000207_060 Hb_001635_140--Hb_000333_140 Hb_011628_010--Hb_000333_140 Hb_001136_080 Hb_001136_080 Hb_011628_010--Hb_001136_080 Hb_002307_150 Hb_002307_150 Hb_011628_010--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_011628_010--Hb_005211_170 Hb_011628_010--Hb_009367_070 Hb_039075_010 Hb_039075_010 Hb_011628_010--Hb_039075_010 Hb_002228_120--Hb_000413_120 Hb_009662_040 Hb_009662_040 Hb_002228_120--Hb_009662_040 Hb_002228_120--Hb_009367_070 Hb_034713_010 Hb_034713_010 Hb_002228_120--Hb_034713_010 Hb_140627_040 Hb_140627_040 Hb_002228_120--Hb_140627_040 Hb_000413_120--Hb_015292_020 Hb_000413_120--Hb_140627_040 Hb_000413_120--Hb_000333_140 Hb_009062_020 Hb_009062_020 Hb_000413_120--Hb_009062_020 Hb_000333_140--Hb_005211_170 Hb_000333_140--Hb_001136_080 Hb_000333_140--Hb_015292_020 Hb_000333_140--Hb_002307_150 Hb_000310_040 Hb_000310_040 Hb_000333_140--Hb_000310_040 Hb_001709_120 Hb_001709_120 Hb_015292_020--Hb_001709_120 Hb_001025_130 Hb_001025_130 Hb_015292_020--Hb_001025_130 Hb_002902_060 Hb_002902_060 Hb_015292_020--Hb_002902_060 Hb_016911_010 Hb_016911_010 Hb_015292_020--Hb_016911_010 Hb_007122_020 Hb_007122_020 Hb_015292_020--Hb_007122_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.605866 12.784 31.038 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109972 0.0864181 0.299639 0.924755 3.64432

CAGE analysis