Hb_004934_050

Information

Type -
Description -
Location Contig4934: 25458-27806
Sequence    

Annotation

kegg
ID tcc:TCM_003170
description Eukaryotic release factor 1-3 isoform 1
nr
ID XP_007049919.1
description Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
swissprot
ID P35614
description Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=1 SV=1
trembl
ID A0A061DPR1
description Eukaryotic release factor 1-3 isoform 1 OS=Theobroma cacao GN=TCM_003170 PE=4 SV=1
Gene Ontology
ID GO:0016149
description eukaryotic release factor 1-3 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45379: 23992-27806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004934_050 0.0 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
2 Hb_002477_090 0.0691817736 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
3 Hb_000340_490 0.0712499389 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
4 Hb_000920_300 0.076766211 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
5 Hb_127743_010 0.0780081024 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
6 Hb_002456_010 0.0781714688 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
7 Hb_004208_050 0.08763752 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
8 Hb_000922_250 0.0883564245 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_003913_070 0.0890675247 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
10 Hb_002213_020 0.0908658257 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
11 Hb_071130_010 0.0925010903 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
12 Hb_049436_010 0.0931604958 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
13 Hb_002805_210 0.0933479512 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
14 Hb_001123_050 0.0939095603 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000069_120 0.0941666447 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
16 Hb_000120_820 0.0941898301 - - dihydrodipicolinate synthase, putative [Ricinus communis]
17 Hb_001157_160 0.0948672526 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
18 Hb_004677_050 0.0955157585 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
19 Hb_000111_290 0.095680918 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
20 Hb_000106_120 0.0957439016 - - hypothetical protein glysoja_007050 [Glycine soja]

Gene co-expression network

sample Hb_004934_050 Hb_004934_050 Hb_002477_090 Hb_002477_090 Hb_004934_050--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_004934_050--Hb_000340_490 Hb_000920_300 Hb_000920_300 Hb_004934_050--Hb_000920_300 Hb_127743_010 Hb_127743_010 Hb_004934_050--Hb_127743_010 Hb_002456_010 Hb_002456_010 Hb_004934_050--Hb_002456_010 Hb_004208_050 Hb_004208_050 Hb_004934_050--Hb_004208_050 Hb_003913_070 Hb_003913_070 Hb_002477_090--Hb_003913_070 Hb_001761_130 Hb_001761_130 Hb_002477_090--Hb_001761_130 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_000106_120 Hb_000106_120 Hb_002477_090--Hb_000106_120 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060 Hb_002639_080 Hb_002639_080 Hb_000340_490--Hb_002639_080 Hb_071130_010 Hb_071130_010 Hb_000340_490--Hb_071130_010 Hb_000069_120 Hb_000069_120 Hb_000340_490--Hb_000069_120 Hb_000340_490--Hb_000106_120 Hb_001628_070 Hb_001628_070 Hb_000340_490--Hb_001628_070 Hb_000920_300--Hb_003913_070 Hb_000920_300--Hb_002456_010 Hb_002641_030 Hb_002641_030 Hb_000920_300--Hb_002641_030 Hb_006520_040 Hb_006520_040 Hb_000920_300--Hb_006520_040 Hb_001671_100 Hb_001671_100 Hb_000920_300--Hb_001671_100 Hb_127743_010--Hb_003913_070 Hb_001417_030 Hb_001417_030 Hb_127743_010--Hb_001417_030 Hb_000111_290 Hb_000111_290 Hb_127743_010--Hb_000111_290 Hb_029243_030 Hb_029243_030 Hb_127743_010--Hb_029243_030 Hb_000340_530 Hb_000340_530 Hb_127743_010--Hb_000340_530 Hb_002456_010--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_002456_010--Hb_001876_050 Hb_000614_240 Hb_000614_240 Hb_002456_010--Hb_000614_240 Hb_004324_130 Hb_004324_130 Hb_002456_010--Hb_004324_130 Hb_003544_060 Hb_003544_060 Hb_002456_010--Hb_003544_060 Hb_000261_480 Hb_000261_480 Hb_004208_050--Hb_000261_480 Hb_004048_120 Hb_004048_120 Hb_004208_050--Hb_004048_120 Hb_000358_050 Hb_000358_050 Hb_004208_050--Hb_000358_050 Hb_011819_020 Hb_011819_020 Hb_004208_050--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5681 88.7999 38.6063 49.8227 43.1364 51.7023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.4085 55.6195 48.6476 116.483 62.7865

CAGE analysis