Hb_004934_090

Information

Type -
Description -
Location Contig4934: 69635-71173
Sequence    

Annotation

kegg
ID rcu:RCOM_1601230
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP36782.1
description hypothetical protein JCGZ_08073 [Jatropha curcas]
swissprot
ID Q5XET4
description Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana GN=EMB975 PE=2 SV=1
trembl
ID A0A067KL02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08073 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45384: 70027-71103 , PASA_asmbl_45385: 71210-71431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004934_090 0.0 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
2 Hb_002097_090 0.0559482371 - - Splicing factor 3A subunit, putative [Ricinus communis]
3 Hb_004096_030 0.056261332 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
4 Hb_005245_130 0.0577323504 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
5 Hb_002030_030 0.0601094442 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
6 Hb_000803_300 0.064712354 - - nuclear movement protein nudc, putative [Ricinus communis]
7 Hb_003994_240 0.0661272331 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
8 Hb_001019_230 0.0685875764 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
9 Hb_000134_090 0.0700597636 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
10 Hb_010931_080 0.0704291009 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
11 Hb_000661_050 0.0711210242 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
12 Hb_000522_090 0.0726208944 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
13 Hb_000803_190 0.0729330116 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
14 Hb_000284_210 0.0736953557 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009620_040 0.0737308016 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
16 Hb_005977_090 0.0742182524 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
17 Hb_002400_180 0.0743851124 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003728_030 0.0744058848 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
19 Hb_001736_040 0.0751405649 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
20 Hb_000184_130 0.0756311785 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004934_090 Hb_004934_090 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_002097_090--Hb_000803_300 Hb_003406_010 Hb_003406_010 Hb_004096_030--Hb_003406_010 Hb_004096_030--Hb_005245_130 Hb_001019_230 Hb_001019_230 Hb_004096_030--Hb_001019_230 Hb_000134_090 Hb_000134_090 Hb_004096_030--Hb_000134_090 Hb_004096_030--Hb_002030_030 Hb_005245_130--Hb_003406_010 Hb_005245_130--Hb_000803_300 Hb_005276_210 Hb_005276_210 Hb_005245_130--Hb_005276_210 Hb_031939_010 Hb_031939_010 Hb_005245_130--Hb_031939_010 Hb_003728_030 Hb_003728_030 Hb_002030_030--Hb_003728_030 Hb_004724_200 Hb_004724_200 Hb_002030_030--Hb_004724_200 Hb_002030_030--Hb_000134_090 Hb_033642_010 Hb_033642_010 Hb_002030_030--Hb_033642_010 Hb_002079_010 Hb_002079_010 Hb_002030_030--Hb_002079_010 Hb_002400_180 Hb_002400_180 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_001936_020 Hb_001936_020 Hb_003994_240--Hb_001936_020 Hb_003994_240--Hb_003728_030 Hb_001663_030 Hb_001663_030 Hb_003994_240--Hb_001663_030 Hb_004108_140 Hb_004108_140 Hb_003994_240--Hb_004108_140 Hb_003994_240--Hb_002030_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0711 13.0658 4.89166 5.62956 20.2301 26.9949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4651 13.3349 13.0998 9.39492 8.04336

CAGE analysis