Hb_004934_130

Information

Type -
Description -
Location Contig4934: 87798-89639
Sequence    

Annotation

kegg
ID tcc:TCM_034407
description 12-oxophytodienoate reductase 2 isoform 1
nr
ID XP_007018069.1
description 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
swissprot
ID Q8GYB8
description 12-oxophytodienoate reductase 2 OS=Arabidopsis thaliana GN=OPR2 PE=1 SV=2
trembl
ID A0A061FLC8
description 12-oxophytodienoate reductase 2 isoform 1 OS=Theobroma cacao GN=TCM_034407 PE=4 SV=1
Gene Ontology
ID GO:0010181
description 12-oxophytodienoate reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45390: 87952-88384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004934_130 0.0 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
2 Hb_002814_010 0.094966254 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
3 Hb_002713_060 0.0977099597 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
4 Hb_000920_100 0.1050700527 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_066293_010 0.1068318831 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
6 Hb_002226_090 0.110612492 - - Stachyose synthase precursor, putative [Ricinus communis]
7 Hb_001541_280 0.1145815694 - - phosphate transporter [Manihot esculenta]
8 Hb_000462_160 0.1158303233 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_002636_070 0.1184660294 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
10 Hb_003058_170 0.1191130487 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
11 Hb_029223_010 0.1193425068 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
12 Hb_020141_030 0.1196170388 - - solanesyl diphosphate synthase, putative [Ricinus communis]
13 Hb_005057_030 0.1197008594 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
14 Hb_003195_080 0.119760353 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
15 Hb_004291_050 0.120095501 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
16 Hb_000347_320 0.1201451401 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
17 Hb_027337_130 0.1205872747 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
18 Hb_169948_010 0.1215652421 - - hypothetical protein VITISV_006524 [Vitis vinifera]
19 Hb_000608_190 0.1225653687 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
20 Hb_004979_070 0.1232235944 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]

Gene co-expression network

sample Hb_004934_130 Hb_004934_130 Hb_002814_010 Hb_002814_010 Hb_004934_130--Hb_002814_010 Hb_002713_060 Hb_002713_060 Hb_004934_130--Hb_002713_060 Hb_000920_100 Hb_000920_100 Hb_004934_130--Hb_000920_100 Hb_066293_010 Hb_066293_010 Hb_004934_130--Hb_066293_010 Hb_002226_090 Hb_002226_090 Hb_004934_130--Hb_002226_090 Hb_001541_280 Hb_001541_280 Hb_004934_130--Hb_001541_280 Hb_002814_010--Hb_001541_280 Hb_000679_320 Hb_000679_320 Hb_002814_010--Hb_000679_320 Hb_020141_030 Hb_020141_030 Hb_002814_010--Hb_020141_030 Hb_000208_270 Hb_000208_270 Hb_002814_010--Hb_000208_270 Hb_000359_160 Hb_000359_160 Hb_002814_010--Hb_000359_160 Hb_005057_030 Hb_005057_030 Hb_002713_060--Hb_005057_030 Hb_173387_010 Hb_173387_010 Hb_002713_060--Hb_173387_010 Hb_010222_060 Hb_010222_060 Hb_002713_060--Hb_010222_060 Hb_002636_070 Hb_002636_070 Hb_002713_060--Hb_002636_070 Hb_000120_480 Hb_000120_480 Hb_002713_060--Hb_000120_480 Hb_009522_020 Hb_009522_020 Hb_002713_060--Hb_009522_020 Hb_004837_080 Hb_004837_080 Hb_000920_100--Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_000920_100--Hb_000254_080 Hb_000230_490 Hb_000230_490 Hb_000920_100--Hb_000230_490 Hb_089124_010 Hb_089124_010 Hb_000920_100--Hb_089124_010 Hb_001097_140 Hb_001097_140 Hb_000920_100--Hb_001097_140 Hb_125961_010 Hb_125961_010 Hb_066293_010--Hb_125961_010 Hb_003226_230 Hb_003226_230 Hb_066293_010--Hb_003226_230 Hb_169948_010 Hb_169948_010 Hb_066293_010--Hb_169948_010 Hb_066293_010--Hb_000120_480 Hb_162676_010 Hb_162676_010 Hb_066293_010--Hb_162676_010 Hb_057880_020 Hb_057880_020 Hb_066293_010--Hb_057880_020 Hb_020367_040 Hb_020367_040 Hb_002226_090--Hb_020367_040 Hb_010402_040 Hb_010402_040 Hb_002226_090--Hb_010402_040 Hb_004117_320 Hb_004117_320 Hb_002226_090--Hb_004117_320 Hb_007904_110 Hb_007904_110 Hb_002226_090--Hb_007904_110 Hb_004291_050 Hb_004291_050 Hb_002226_090--Hb_004291_050 Hb_004979_080 Hb_004979_080 Hb_002226_090--Hb_004979_080 Hb_000270_640 Hb_000270_640 Hb_001541_280--Hb_000270_640 Hb_000847_030 Hb_000847_030 Hb_001541_280--Hb_000847_030 Hb_001541_280--Hb_020141_030 Hb_000140_460 Hb_000140_460 Hb_001541_280--Hb_000140_460 Hb_000002_300 Hb_000002_300 Hb_001541_280--Hb_000002_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.033263 2.23002 3.18421 5.48116 0.0322516 0.177898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0759178 0.0895808 0 0.967929 14.4422

CAGE analysis