Hb_004935_030

Information

Type -
Description -
Location Contig4935: 44012-50286
Sequence    

Annotation

kegg
ID cit:102628125
description uncharacterized LOC102628125
nr
ID XP_006474353.1
description PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID B9HBC4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07970g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45391: 46164-72578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004935_030 0.0 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
2 Hb_003362_070 0.0412989289 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
3 Hb_000083_160 0.0521477992 - - Cell division cycle protein, putative [Ricinus communis]
4 Hb_003371_110 0.0584341163 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
5 Hb_000457_260 0.0621025101 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
6 Hb_001617_060 0.062971997 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
7 Hb_007576_110 0.0640595417 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
8 Hb_048476_180 0.0649220861 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
9 Hb_000127_040 0.0654980646 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
10 Hb_003680_150 0.065715005 - - srpk, putative [Ricinus communis]
11 Hb_000613_050 0.0664459972 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
12 Hb_031284_040 0.0667052777 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
13 Hb_000922_370 0.066902827 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
14 Hb_016898_010 0.0670954432 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
15 Hb_001195_320 0.0671269684 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
16 Hb_001946_340 0.0683249398 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
17 Hb_000008_290 0.0686903919 - - PREDICTED: protein SAND [Jatropha curcas]
18 Hb_003966_030 0.0695953357 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
19 Hb_000183_020 0.0706307709 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
20 Hb_014361_070 0.0712418959 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_004935_030 Hb_004935_030 Hb_003362_070 Hb_003362_070 Hb_004935_030--Hb_003362_070 Hb_000083_160 Hb_000083_160 Hb_004935_030--Hb_000083_160 Hb_003371_110 Hb_003371_110 Hb_004935_030--Hb_003371_110 Hb_000457_260 Hb_000457_260 Hb_004935_030--Hb_000457_260 Hb_001617_060 Hb_001617_060 Hb_004935_030--Hb_001617_060 Hb_007576_110 Hb_007576_110 Hb_004935_030--Hb_007576_110 Hb_016898_010 Hb_016898_010 Hb_003362_070--Hb_016898_010 Hb_048476_180 Hb_048476_180 Hb_003362_070--Hb_048476_180 Hb_003966_030 Hb_003966_030 Hb_003362_070--Hb_003966_030 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003044_020 Hb_003044_020 Hb_003362_070--Hb_003044_020 Hb_031284_040 Hb_031284_040 Hb_000083_160--Hb_031284_040 Hb_000271_090 Hb_000271_090 Hb_000083_160--Hb_000271_090 Hb_000083_160--Hb_001617_060 Hb_001635_090 Hb_001635_090 Hb_000083_160--Hb_001635_090 Hb_002235_170 Hb_002235_170 Hb_000083_160--Hb_002235_170 Hb_014361_070 Hb_014361_070 Hb_003371_110--Hb_014361_070 Hb_001195_320 Hb_001195_320 Hb_003371_110--Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_003371_110--Hb_000166_130 Hb_002823_030 Hb_002823_030 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_000347_180 Hb_000347_180 Hb_000457_260--Hb_000347_180 Hb_123352_020 Hb_123352_020 Hb_000457_260--Hb_123352_020 Hb_000457_260--Hb_003362_070 Hb_172632_080 Hb_172632_080 Hb_000457_260--Hb_172632_080 Hb_001700_040 Hb_001700_040 Hb_000457_260--Hb_001700_040 Hb_000613_080 Hb_000613_080 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_001617_060--Hb_003966_030 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_000789_310 Hb_000789_310 Hb_007576_110--Hb_000789_310 Hb_000366_120 Hb_000366_120 Hb_007576_110--Hb_000366_120 Hb_007576_110--Hb_014361_070 Hb_007576_110--Hb_000190_120 Hb_001409_020 Hb_001409_020 Hb_007576_110--Hb_001409_020 Hb_002375_010 Hb_002375_010 Hb_007576_110--Hb_002375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.6053 6.29285 4.24211 5.53044 6.29807 10.6159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.10055 4.10087 4.9555 6.4453 5.14698

CAGE analysis