Hb_004935_060

Information

Type -
Description -
Location Contig4935: 61605-62770
Sequence    

Annotation

kegg
ID gmx:100818167
description uncharacterized LOC100818167
nr
ID XP_007043997.1
description Uncharacterized protein isoform 2 [Theobroma cacao]
swissprot
ID Q9BYJ9
description YTH domain-containing family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1
trembl
ID A0A061EC21
description Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_008783 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45391: 46164-72578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004935_060 0.0 - - Uncharacterized protein isoform 2 [Theobroma cacao]
2 Hb_003141_070 0.0738253003 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
3 Hb_002735_050 0.0880679275 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
4 Hb_005144_050 0.0885504067 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
5 Hb_003697_050 0.0935071473 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
6 Hb_002289_080 0.095301427 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
7 Hb_025098_010 0.09703258 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_002284_230 0.0988731915 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
9 Hb_001307_030 0.1038512002 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
10 Hb_185255_010 0.1040225299 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
11 Hb_001024_020 0.1053227753 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
12 Hb_001512_010 0.106205448 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
13 Hb_024128_020 0.1064484113 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
14 Hb_001006_020 0.1087735045 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
15 Hb_002481_060 0.1094740518 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
16 Hb_002043_040 0.1136689775 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
17 Hb_006162_010 0.1140832824 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
18 Hb_000329_210 0.1141070957 - - Golgi snare 12 isoform 1 [Theobroma cacao]
19 Hb_002304_040 0.1147093802 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
20 Hb_004129_140 0.1199032743 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]

Gene co-expression network

sample Hb_004935_060 Hb_004935_060 Hb_003141_070 Hb_003141_070 Hb_004935_060--Hb_003141_070 Hb_002735_050 Hb_002735_050 Hb_004935_060--Hb_002735_050 Hb_005144_050 Hb_005144_050 Hb_004935_060--Hb_005144_050 Hb_003697_050 Hb_003697_050 Hb_004935_060--Hb_003697_050 Hb_002289_080 Hb_002289_080 Hb_004935_060--Hb_002289_080 Hb_025098_010 Hb_025098_010 Hb_004935_060--Hb_025098_010 Hb_002304_040 Hb_002304_040 Hb_003141_070--Hb_002304_040 Hb_003141_070--Hb_002735_050 Hb_003141_070--Hb_025098_010 Hb_003141_070--Hb_005144_050 Hb_003529_030 Hb_003529_030 Hb_003141_070--Hb_003529_030 Hb_002735_050--Hb_003697_050 Hb_002735_050--Hb_002289_080 Hb_002284_230 Hb_002284_230 Hb_002735_050--Hb_002284_230 Hb_002735_050--Hb_025098_010 Hb_001366_180 Hb_001366_180 Hb_005144_050--Hb_001366_180 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_005144_050--Hb_002289_080 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020 Hb_003697_050--Hb_002284_230 Hb_001268_050 Hb_001268_050 Hb_003697_050--Hb_001268_050 Hb_003697_050--Hb_025098_010 Hb_001390_130 Hb_001390_130 Hb_003697_050--Hb_001390_130 Hb_094836_010 Hb_094836_010 Hb_003697_050--Hb_094836_010 Hb_001168_020 Hb_001168_020 Hb_002289_080--Hb_001168_020 Hb_000310_090 Hb_000310_090 Hb_002289_080--Hb_000310_090 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_002289_080--Hb_025098_010 Hb_025098_010--Hb_185255_010 Hb_025098_010--Hb_000310_090 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22499 1.24915 1.28224 6.349 2.24618 3.4791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.51057 3.54439 4.24125 2.86332 4.97269

CAGE analysis