Hb_004935_080

Information

Type -
Description -
Location Contig4935: 71817-72119
Sequence    

Annotation

kegg
ID tcc:TCM_039932
description hypothetical protein
nr
ID AAL50075.1
description AT3g13060/MGH6_17 [Arabidopsis thaliana]
swissprot
ID -
description -
trembl
ID Q8VYJ3
description AT3g13060/MGH6_17 OS=Arabidopsis thaliana PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45391: 46164-72578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004935_080 0.0 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
2 Hb_070469_010 0.0988967837 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
3 Hb_002320_070 0.1318873265 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000130_190 0.1443987364 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
5 Hb_003038_220 0.14988367 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
6 Hb_013358_100 0.1504072632 - - unknown [Medicago truncatula]
7 Hb_009393_200 0.1541722928 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
8 Hb_001882_110 0.1543257654 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
9 Hb_126295_010 0.1550458208 - - PREDICTED: protein SEH1 [Jatropha curcas]
10 Hb_076874_010 0.1565446928 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
11 Hb_142751_010 0.159027193 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009119_030 0.1596129449 - - GMFP4 [Medicago truncatula]
13 Hb_000637_140 0.1608174821 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
14 Hb_002742_080 0.1609117096 - - unknown [Populus trichocarpa]
15 Hb_015354_010 0.1652978571 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_086022_010 0.1674790445 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
17 Hb_073973_160 0.1687845925 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
18 Hb_121467_010 0.1698577835 - - tubulin-specific chaperone E, putative [Ricinus communis]
19 Hb_000091_060 0.1719473493 - - PREDICTED: galactose oxidase [Jatropha curcas]
20 Hb_000136_190 0.1737609826 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004935_080 Hb_004935_080 Hb_070469_010 Hb_070469_010 Hb_004935_080--Hb_070469_010 Hb_002320_070 Hb_002320_070 Hb_004935_080--Hb_002320_070 Hb_000130_190 Hb_000130_190 Hb_004935_080--Hb_000130_190 Hb_003038_220 Hb_003038_220 Hb_004935_080--Hb_003038_220 Hb_013358_100 Hb_013358_100 Hb_004935_080--Hb_013358_100 Hb_009393_200 Hb_009393_200 Hb_004935_080--Hb_009393_200 Hb_076874_010 Hb_076874_010 Hb_070469_010--Hb_076874_010 Hb_162040_010 Hb_162040_010 Hb_070469_010--Hb_162040_010 Hb_126295_010 Hb_126295_010 Hb_070469_010--Hb_126295_010 Hb_003925_070 Hb_003925_070 Hb_070469_010--Hb_003925_070 Hb_121467_010 Hb_121467_010 Hb_070469_010--Hb_121467_010 Hb_005408_020 Hb_005408_020 Hb_002320_070--Hb_005408_020 Hb_073973_160 Hb_073973_160 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_003894_040 Hb_003894_040 Hb_002320_070--Hb_003894_040 Hb_009119_030 Hb_009119_030 Hb_002320_070--Hb_009119_030 Hb_000130_190--Hb_009119_030 Hb_028707_080 Hb_028707_080 Hb_000130_190--Hb_028707_080 Hb_000130_190--Hb_002320_070 Hb_008029_020 Hb_008029_020 Hb_000130_190--Hb_008029_020 Hb_019053_020 Hb_019053_020 Hb_000130_190--Hb_019053_020 Hb_015354_010 Hb_015354_010 Hb_003038_220--Hb_015354_010 Hb_012760_130 Hb_012760_130 Hb_003038_220--Hb_012760_130 Hb_007123_060 Hb_007123_060 Hb_003038_220--Hb_007123_060 Hb_003038_220--Hb_003925_070 Hb_004883_050 Hb_004883_050 Hb_003038_220--Hb_004883_050 Hb_177152_010 Hb_177152_010 Hb_013358_100--Hb_177152_010 Hb_068569_010 Hb_068569_010 Hb_013358_100--Hb_068569_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_035436_010 Hb_035436_010 Hb_013358_100--Hb_035436_010 Hb_065841_010 Hb_065841_010 Hb_013358_100--Hb_065841_010 Hb_000122_010 Hb_000122_010 Hb_009393_200--Hb_000122_010 Hb_009222_070 Hb_009222_070 Hb_009393_200--Hb_009222_070 Hb_010053_040 Hb_010053_040 Hb_009393_200--Hb_010053_040 Hb_008511_060 Hb_008511_060 Hb_009393_200--Hb_008511_060 Hb_004374_130 Hb_004374_130 Hb_009393_200--Hb_004374_130 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.9147 24.4684 22.8931 47.8592 27.1788 55.5082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.20613 7.47489 5.75334 6.12948 7.14341

CAGE analysis