Hb_004939_020

Information

Type -
Description -
Location Contig4939: 38880-39918
Sequence    

Annotation

kegg
ID cmo:103496664
description uncharacterized LOC103496664
nr
ID ADJ18449.1
description gag/pol protein [Bryonia dioica]
swissprot
ID -
description -
trembl
ID E2GK51
description Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004939_020 0.0 - - gag/pol protein [Bryonia dioica]
2 Hb_003816_020 0.1328099701 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
3 Hb_022452_010 0.1940193303 - - -
4 Hb_171659_010 0.2038312513 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
5 Hb_000205_070 0.224295568 - - kinase, putative [Ricinus communis]
6 Hb_009189_030 0.2327263903 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
7 Hb_003337_070 0.2360690864 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
8 Hb_000146_060 0.2464580581 - - -
9 Hb_167316_010 0.2495757864 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
10 Hb_001276_010 0.2532046896 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
11 Hb_000684_340 0.2586227477 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
12 Hb_001279_230 0.2640641659 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
13 Hb_005203_050 0.2657065716 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_003222_010 0.2753034637 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_004631_160 0.2757388517 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
16 Hb_033926_010 0.2784968468 - - -
17 Hb_003398_010 0.2801648965 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
18 Hb_008064_010 0.2850376389 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
19 Hb_000853_300 0.286405316 - - -
20 Hb_006745_020 0.287135949 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]

Gene co-expression network

sample Hb_004939_020 Hb_004939_020 Hb_003816_020 Hb_003816_020 Hb_004939_020--Hb_003816_020 Hb_022452_010 Hb_022452_010 Hb_004939_020--Hb_022452_010 Hb_171659_010 Hb_171659_010 Hb_004939_020--Hb_171659_010 Hb_000205_070 Hb_000205_070 Hb_004939_020--Hb_000205_070 Hb_009189_030 Hb_009189_030 Hb_004939_020--Hb_009189_030 Hb_003337_070 Hb_003337_070 Hb_004939_020--Hb_003337_070 Hb_003816_020--Hb_022452_010 Hb_003816_020--Hb_171659_010 Hb_001276_010 Hb_001276_010 Hb_003816_020--Hb_001276_010 Hb_003816_020--Hb_000205_070 Hb_000317_090 Hb_000317_090 Hb_003816_020--Hb_000317_090 Hb_022452_010--Hb_001276_010 Hb_000176_060 Hb_000176_060 Hb_022452_010--Hb_000176_060 Hb_022452_010--Hb_171659_010 Hb_022452_010--Hb_000205_070 Hb_001951_120 Hb_001951_120 Hb_022452_010--Hb_001951_120 Hb_003772_080 Hb_003772_080 Hb_171659_010--Hb_003772_080 Hb_171659_010--Hb_001276_010 Hb_171659_010--Hb_000317_090 Hb_027255_010 Hb_027255_010 Hb_000205_070--Hb_027255_010 Hb_000205_070--Hb_003337_070 Hb_000205_070--Hb_000176_060 Hb_000205_070--Hb_009189_030 Hb_006745_020 Hb_006745_020 Hb_000205_070--Hb_006745_020 Hb_003222_010 Hb_003222_010 Hb_009189_030--Hb_003222_010 Hb_009189_030--Hb_027255_010 Hb_000853_290 Hb_000853_290 Hb_009189_030--Hb_000853_290 Hb_004631_160 Hb_004631_160 Hb_009189_030--Hb_004631_160 Hb_009189_030--Hb_003337_070 Hb_003337_070--Hb_006745_020 Hb_003647_120 Hb_003647_120 Hb_003337_070--Hb_003647_120 Hb_001279_230 Hb_001279_230 Hb_003337_070--Hb_001279_230 Hb_184326_010 Hb_184326_010 Hb_003337_070--Hb_184326_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0279214 0.0563171 0 0 0.0523728 0.0246716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis