Hb_004945_050

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig4945: 47307-49597
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08740g
description hypothetical protein
nr
ID XP_006379668.1
description hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
swissprot
ID Q93ZL5
description Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2
trembl
ID U5G227
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08740g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45427: 48471-49248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004945_050 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
2 Hb_000060_100 0.0937226919 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
3 Hb_001677_120 0.0968324163 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_008550_030 0.0978083171 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
5 Hb_002341_040 0.1007208716 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
6 Hb_000325_070 0.1073296233 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000027_060 0.117629433 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
8 Hb_004724_300 0.1184047461 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
9 Hb_001104_270 0.1203078621 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
10 Hb_000247_150 0.1224666007 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
11 Hb_001821_050 0.1244970927 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
12 Hb_001534_150 0.1257808235 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
13 Hb_007102_010 0.1259072156 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
14 Hb_004112_050 0.1271893086 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_013720_010 0.129206043 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
16 Hb_002097_210 0.1319880523 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005694_150 0.1321559605 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
18 Hb_026415_010 0.1329245017 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_160576_010 0.1366554111 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
20 Hb_002234_200 0.1387653352 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004945_050 Hb_004945_050 Hb_000060_100 Hb_000060_100 Hb_004945_050--Hb_000060_100 Hb_001677_120 Hb_001677_120 Hb_004945_050--Hb_001677_120 Hb_008550_030 Hb_008550_030 Hb_004945_050--Hb_008550_030 Hb_002341_040 Hb_002341_040 Hb_004945_050--Hb_002341_040 Hb_000325_070 Hb_000325_070 Hb_004945_050--Hb_000325_070 Hb_000027_060 Hb_000027_060 Hb_004945_050--Hb_000027_060 Hb_160576_010 Hb_160576_010 Hb_000060_100--Hb_160576_010 Hb_001104_270 Hb_001104_270 Hb_000060_100--Hb_001104_270 Hb_002218_080 Hb_002218_080 Hb_000060_100--Hb_002218_080 Hb_002110_050 Hb_002110_050 Hb_000060_100--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000060_100--Hb_001956_160 Hb_002375_080 Hb_002375_080 Hb_001677_120--Hb_002375_080 Hb_001821_050 Hb_001821_050 Hb_001677_120--Hb_001821_050 Hb_007007_090 Hb_007007_090 Hb_001677_120--Hb_007007_090 Hb_006573_280 Hb_006573_280 Hb_001677_120--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_001677_120--Hb_004724_300 Hb_002097_210 Hb_002097_210 Hb_008550_030--Hb_002097_210 Hb_002267_030 Hb_002267_030 Hb_008550_030--Hb_002267_030 Hb_008550_030--Hb_002341_040 Hb_030370_070 Hb_030370_070 Hb_008550_030--Hb_030370_070 Hb_008550_030--Hb_000060_100 Hb_002341_040--Hb_000060_100 Hb_002341_040--Hb_001677_120 Hb_001534_150 Hb_001534_150 Hb_002341_040--Hb_001534_150 Hb_002341_040--Hb_002097_210 Hb_026415_010 Hb_026415_010 Hb_000325_070--Hb_026415_010 Hb_005694_150 Hb_005694_150 Hb_000325_070--Hb_005694_150 Hb_000375_150 Hb_000375_150 Hb_000325_070--Hb_000375_150 Hb_004879_030 Hb_004879_030 Hb_000325_070--Hb_004879_030 Hb_000325_070--Hb_004724_300 Hb_000015_230 Hb_000015_230 Hb_000325_070--Hb_000015_230 Hb_000027_060--Hb_001534_150 Hb_000331_710 Hb_000331_710 Hb_000027_060--Hb_000331_710 Hb_013720_010 Hb_013720_010 Hb_000027_060--Hb_013720_010 Hb_000705_130 Hb_000705_130 Hb_000027_060--Hb_000705_130 Hb_008040_060 Hb_008040_060 Hb_000027_060--Hb_008040_060 Hb_003914_050 Hb_003914_050 Hb_000027_060--Hb_003914_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0740013 22.6096 5.32017 6.82798 0.129748 0.103449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.1313 5.7198

CAGE analysis