Hb_004954_070

Information

Type -
Description -
Location Contig4954: 68865-99585
Sequence    

Annotation

kegg
ID rcu:RCOM_0089360
description hypothetical protein
nr
ID XP_012086109.1
description PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SL51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0089360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45442: 69440-69725 , PASA_asmbl_45443: 69815-70383 , PASA_asmbl_45444: 71085-90888 , PASA_asmbl_45445: 91590-92051 , PASA_asmbl_45446: 95050-95603 , PASA_asmbl_45447: 94548-95418 , PASA_asmbl_45448: 98561-99304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004954_070 0.0 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
2 Hb_007575_050 0.0580918814 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
3 Hb_000011_230 0.0688766869 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
4 Hb_017862_020 0.0696187218 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
5 Hb_004410_030 0.0728646564 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000225_040 0.0733916851 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
7 Hb_031284_040 0.0740782463 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
8 Hb_000023_330 0.0751214455 - - RNA recognition motif-containing family protein [Populus trichocarpa]
9 Hb_007632_240 0.0773386431 - - transporter, putative [Ricinus communis]
10 Hb_001178_070 0.0777828405 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
11 Hb_002784_020 0.0794442446 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
12 Hb_000205_100 0.0795973128 - - PREDICTED: exportin-4 [Jatropha curcas]
13 Hb_000613_050 0.0814573044 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
14 Hb_004429_100 0.0821952496 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
15 Hb_000190_120 0.0824158503 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
16 Hb_000084_120 0.0825032887 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
17 Hb_004235_080 0.0826406538 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
18 Hb_003878_070 0.0833877481 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
19 Hb_004412_010 0.0837877135 - - -
20 Hb_000193_190 0.0843955813 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]

Gene co-expression network

sample Hb_004954_070 Hb_004954_070 Hb_007575_050 Hb_007575_050 Hb_004954_070--Hb_007575_050 Hb_000011_230 Hb_000011_230 Hb_004954_070--Hb_000011_230 Hb_017862_020 Hb_017862_020 Hb_004954_070--Hb_017862_020 Hb_004410_030 Hb_004410_030 Hb_004954_070--Hb_004410_030 Hb_000225_040 Hb_000225_040 Hb_004954_070--Hb_000225_040 Hb_031284_040 Hb_031284_040 Hb_004954_070--Hb_031284_040 Hb_003878_070 Hb_003878_070 Hb_007575_050--Hb_003878_070 Hb_007575_050--Hb_000225_040 Hb_003025_110 Hb_003025_110 Hb_007575_050--Hb_003025_110 Hb_002518_280 Hb_002518_280 Hb_007575_050--Hb_002518_280 Hb_004412_010 Hb_004412_010 Hb_007575_050--Hb_004412_010 Hb_000190_120 Hb_000190_120 Hb_000011_230--Hb_000190_120 Hb_009486_180 Hb_009486_180 Hb_000011_230--Hb_009486_180 Hb_009175_020 Hb_009175_020 Hb_000011_230--Hb_009175_020 Hb_000011_230--Hb_004412_010 Hb_000084_120 Hb_000084_120 Hb_000011_230--Hb_000084_120 Hb_002784_020 Hb_002784_020 Hb_017862_020--Hb_002784_020 Hb_000207_180 Hb_000207_180 Hb_017862_020--Hb_000207_180 Hb_002686_030 Hb_002686_030 Hb_017862_020--Hb_002686_030 Hb_017862_020--Hb_000225_040 Hb_000395_130 Hb_000395_130 Hb_017862_020--Hb_000395_130 Hb_000579_230 Hb_000579_230 Hb_017862_020--Hb_000579_230 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_000011_200 Hb_000011_200 Hb_004410_030--Hb_000011_200 Hb_004410_030--Hb_003025_110 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_000083_160 Hb_000083_160 Hb_031284_040--Hb_000083_160 Hb_000173_490 Hb_000173_490 Hb_031284_040--Hb_000173_490 Hb_031284_040--Hb_007575_050 Hb_004935_030 Hb_004935_030 Hb_031284_040--Hb_004935_030 Hb_000271_090 Hb_000271_090 Hb_031284_040--Hb_000271_090 Hb_008159_020 Hb_008159_020 Hb_031284_040--Hb_008159_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9872 4.41139 2.64902 2.37282 5.16189 6.77585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.63857 4.40193 3.38317 6.54296 3.83215

CAGE analysis