Hb_004957_010

Information

Type -
Description -
Location Contig4957: 4381-6362
Sequence    

Annotation

kegg
ID pmum:103341593
description probable aquaporin NIP-type
nr
ID XP_008243360.1
description PREDICTED: probable aquaporin NIP-type [Prunus mume]
swissprot
ID P49173
description Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1
trembl
ID A0A067FMQ8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040755mg PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable aquaporin nip-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004957_010 0.0 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
2 Hb_003754_010 0.0200469078 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
3 Hb_001308_010 0.032949347 - - conserved hypothetical protein [Ricinus communis]
4 Hb_153544_020 0.0434167354 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
5 Hb_000997_220 0.0495577013 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
6 Hb_006651_020 0.0623614942 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
7 Hb_010833_010 0.0632725917 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
8 Hb_004225_010 0.0708134914 - - -
9 Hb_150179_010 0.0715304386 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
10 Hb_029584_030 0.0737957179 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
11 Hb_005653_050 0.0738057385 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
12 Hb_001557_030 0.0849470232 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
13 Hb_000664_010 0.0874310652 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
14 Hb_004030_040 0.0879070117 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
15 Hb_011224_030 0.0897489793 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
16 Hb_001856_250 0.0900963224 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
17 Hb_014834_100 0.0907504434 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
18 Hb_010327_060 0.0933866188 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
19 Hb_001373_170 0.0942488258 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
20 Hb_000318_500 0.0946869917 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004957_010 Hb_004957_010 Hb_003754_010 Hb_003754_010 Hb_004957_010--Hb_003754_010 Hb_001308_010 Hb_001308_010 Hb_004957_010--Hb_001308_010 Hb_153544_020 Hb_153544_020 Hb_004957_010--Hb_153544_020 Hb_000997_220 Hb_000997_220 Hb_004957_010--Hb_000997_220 Hb_006651_020 Hb_006651_020 Hb_004957_010--Hb_006651_020 Hb_010833_010 Hb_010833_010 Hb_004957_010--Hb_010833_010 Hb_003754_010--Hb_153544_020 Hb_003754_010--Hb_001308_010 Hb_003754_010--Hb_000997_220 Hb_003754_010--Hb_010833_010 Hb_003754_010--Hb_006651_020 Hb_004225_010 Hb_004225_010 Hb_001308_010--Hb_004225_010 Hb_005653_050 Hb_005653_050 Hb_001308_010--Hb_005653_050 Hb_001308_010--Hb_000997_220 Hb_001373_170 Hb_001373_170 Hb_001308_010--Hb_001373_170 Hb_153544_020--Hb_010833_010 Hb_153544_020--Hb_006651_020 Hb_010327_060 Hb_010327_060 Hb_153544_020--Hb_010327_060 Hb_153544_020--Hb_000997_220 Hb_000483_340 Hb_000483_340 Hb_000997_220--Hb_000483_340 Hb_001856_250 Hb_001856_250 Hb_000997_220--Hb_001856_250 Hb_004030_040 Hb_004030_040 Hb_006651_020--Hb_004030_040 Hb_002757_030 Hb_002757_030 Hb_006651_020--Hb_002757_030 Hb_006651_020--Hb_001856_250 Hb_006651_020--Hb_010833_010 Hb_010833_010--Hb_000997_220 Hb_010833_010--Hb_010327_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.034312 0.422958 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0799432

CAGE analysis