Hb_004957_050

Information

Type -
Description -
Location Contig4957: 28069-28476
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12360g
description POPTRDRAFT_566504; hypothetical protein
nr
ID XP_002315885.2
description hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HW73
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12360g PE=4 SV=2
Gene Ontology
ID GO:0031225
description leucine-rich repeat extensin-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004957_050 0.0 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
2 Hb_003052_080 0.1049632372 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
3 Hb_000392_540 0.1211056721 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
4 Hb_002374_510 0.121219241 - - Esterase precursor, putative [Ricinus communis]
5 Hb_113766_010 0.1291380497 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
6 Hb_014361_010 0.137121607 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
7 Hb_001008_080 0.1394065706 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
8 Hb_009122_010 0.1398029252 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_002495_030 0.1429067573 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
10 Hb_000309_070 0.1430693912 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
11 Hb_002284_060 0.1439957507 - - sugar transporter, putative [Ricinus communis]
12 Hb_002400_300 0.1440511056 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
13 Hb_000251_120 0.1477514225 - - O-acetyltransferase, putative [Ricinus communis]
14 Hb_000103_300 0.1499506458 - - PREDICTED: perakine reductase-like [Jatropha curcas]
15 Hb_002759_030 0.1504781507 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
16 Hb_000005_010 0.1524523948 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
17 Hb_002890_110 0.1527454608 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
18 Hb_000580_110 0.1538506504 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
19 Hb_002750_040 0.1553958101 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
20 Hb_002391_240 0.1558709714 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004957_050 Hb_004957_050 Hb_003052_080 Hb_003052_080 Hb_004957_050--Hb_003052_080 Hb_000392_540 Hb_000392_540 Hb_004957_050--Hb_000392_540 Hb_002374_510 Hb_002374_510 Hb_004957_050--Hb_002374_510 Hb_113766_010 Hb_113766_010 Hb_004957_050--Hb_113766_010 Hb_014361_010 Hb_014361_010 Hb_004957_050--Hb_014361_010 Hb_001008_080 Hb_001008_080 Hb_004957_050--Hb_001008_080 Hb_002495_030 Hb_002495_030 Hb_003052_080--Hb_002495_030 Hb_000309_070 Hb_000309_070 Hb_003052_080--Hb_000309_070 Hb_001404_070 Hb_001404_070 Hb_003052_080--Hb_001404_070 Hb_007590_100 Hb_007590_100 Hb_003052_080--Hb_007590_100 Hb_002750_040 Hb_002750_040 Hb_003052_080--Hb_002750_040 Hb_010968_030 Hb_010968_030 Hb_000392_540--Hb_010968_030 Hb_011224_150 Hb_011224_150 Hb_000392_540--Hb_011224_150 Hb_000251_120 Hb_000251_120 Hb_000392_540--Hb_000251_120 Hb_000367_080 Hb_000367_080 Hb_000392_540--Hb_000367_080 Hb_002890_110 Hb_002890_110 Hb_000392_540--Hb_002890_110 Hb_009122_010 Hb_009122_010 Hb_002374_510--Hb_009122_010 Hb_003371_280 Hb_003371_280 Hb_002374_510--Hb_003371_280 Hb_002374_510--Hb_113766_010 Hb_001269_660 Hb_001269_660 Hb_002374_510--Hb_001269_660 Hb_002370_020 Hb_002370_020 Hb_002374_510--Hb_002370_020 Hb_012395_060 Hb_012395_060 Hb_002374_510--Hb_012395_060 Hb_000103_300 Hb_000103_300 Hb_113766_010--Hb_000103_300 Hb_002391_240 Hb_002391_240 Hb_113766_010--Hb_002391_240 Hb_026198_020 Hb_026198_020 Hb_113766_010--Hb_026198_020 Hb_000152_570 Hb_000152_570 Hb_113766_010--Hb_000152_570 Hb_002284_060 Hb_002284_060 Hb_113766_010--Hb_002284_060 Hb_113766_010--Hb_002750_040 Hb_002759_030 Hb_002759_030 Hb_014361_010--Hb_002759_030 Hb_000864_050 Hb_000864_050 Hb_014361_010--Hb_000864_050 Hb_005305_040 Hb_005305_040 Hb_014361_010--Hb_005305_040 Hb_001195_710 Hb_001195_710 Hb_014361_010--Hb_001195_710 Hb_001001_070 Hb_001001_070 Hb_014361_010--Hb_001001_070 Hb_001008_080--Hb_002495_030 Hb_000003_580 Hb_000003_580 Hb_001008_080--Hb_000003_580 Hb_006750_010 Hb_006750_010 Hb_001008_080--Hb_006750_010 Hb_020378_020 Hb_020378_020 Hb_001008_080--Hb_020378_020 Hb_001195_380 Hb_001195_380 Hb_001008_080--Hb_001195_380 Hb_003086_030 Hb_003086_030 Hb_001008_080--Hb_003086_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.567333 13.0826 23.2889 136.928 0.540562 0.0737177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.87848 7.23497 2.42703 26.7675 98.9338

CAGE analysis