Hb_004958_030

Information

Type -
Description -
Location Contig4958: 47997-49225
Sequence    

Annotation

kegg
ID bvg:104904188
description uncharacterized LOC104904188
nr
ID XP_010690686.1
description PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID M4EYE7
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra033839 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004958_030 0.0 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]
2 Hb_017436_010 0.2223860187 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_039548_010 0.223223279 - - hypothetical protein RCOM_1685970 [Ricinus communis]
4 Hb_159085_010 0.2528066237 - - -
5 Hb_003001_100 0.2550652284 - - PREDICTED: uncharacterized protein LOC103334281 [Prunus mume]
6 Hb_002835_220 0.2679003196 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
7 Hb_188382_010 0.2698805301 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_005946_030 0.2797664233 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_001864_030 0.2849637499 - - thioredoxin h [Hevea brasiliensis]
10 Hb_000173_100 0.2867112495 - - -
11 Hb_001047_140 0.2909877789 - - -
12 Hb_000445_330 0.2983256648 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004502_080 0.3024463781 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
14 Hb_000086_330 0.3042235449 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
15 Hb_000562_080 0.3083200382 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002301_240 0.3099249067 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
17 Hb_001141_400 0.310023124 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
18 Hb_003209_030 0.314048389 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
19 Hb_000331_320 0.314752194 - - -
20 Hb_000329_530 0.3164116885 - - Uncharacterized protein TCM_038736 [Theobroma cacao]

Gene co-expression network

sample Hb_004958_030 Hb_004958_030 Hb_017436_010 Hb_017436_010 Hb_004958_030--Hb_017436_010 Hb_039548_010 Hb_039548_010 Hb_004958_030--Hb_039548_010 Hb_159085_010 Hb_159085_010 Hb_004958_030--Hb_159085_010 Hb_003001_100 Hb_003001_100 Hb_004958_030--Hb_003001_100 Hb_002835_220 Hb_002835_220 Hb_004958_030--Hb_002835_220 Hb_188382_010 Hb_188382_010 Hb_004958_030--Hb_188382_010 Hb_017436_010--Hb_039548_010 Hb_005946_030 Hb_005946_030 Hb_017436_010--Hb_005946_030 Hb_006501_030 Hb_006501_030 Hb_017436_010--Hb_006501_030 Hb_017436_010--Hb_188382_010 Hb_000067_020 Hb_000067_020 Hb_017436_010--Hb_000067_020 Hb_039548_010--Hb_005946_030 Hb_039548_010--Hb_188382_010 Hb_039305_010 Hb_039305_010 Hb_039548_010--Hb_039305_010 Hb_039548_010--Hb_159085_010 Hb_159085_010--Hb_039305_010 Hb_000736_010 Hb_000736_010 Hb_159085_010--Hb_000736_010 Hb_003773_030 Hb_003773_030 Hb_159085_010--Hb_003773_030 Hb_001141_400 Hb_001141_400 Hb_159085_010--Hb_001141_400 Hb_000373_300 Hb_000373_300 Hb_159085_010--Hb_000373_300 Hb_159085_010--Hb_000067_020 Hb_000173_100 Hb_000173_100 Hb_003001_100--Hb_000173_100 Hb_003001_100--Hb_000067_020 Hb_102438_010 Hb_102438_010 Hb_003001_100--Hb_102438_010 Hb_003001_100--Hb_159085_010 Hb_000008_260 Hb_000008_260 Hb_003001_100--Hb_000008_260 Hb_007741_040 Hb_007741_040 Hb_002835_220--Hb_007741_040 Hb_000567_280 Hb_000567_280 Hb_002835_220--Hb_000567_280 Hb_003777_230 Hb_003777_230 Hb_002835_220--Hb_003777_230 Hb_000005_030 Hb_000005_030 Hb_002835_220--Hb_000005_030 Hb_001631_080 Hb_001631_080 Hb_002835_220--Hb_001631_080 Hb_000526_020 Hb_000526_020 Hb_002835_220--Hb_000526_020 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_002742_010 Hb_002742_010 Hb_188382_010--Hb_002742_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0543655 0 0 0.0414367 0.451553 0.254074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19394 0.312785 0 0.0320491 0

CAGE analysis