Hb_004958_050

Information

Type -
Description -
Location Contig4958: 57174-58062
Sequence    

Annotation

kegg
ID cic:CICLE_v10032980mg
description hypothetical protein
nr
ID XP_006436065.1
description hypothetical protein CICLE_v10032980mg [Citrus clementina]
swissprot
ID Q9AT35
description 60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1
trembl
ID A0A067FK20
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031766mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l23a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45464: 55571-58195
cDNA
(Sanger)
(ID:Location)		 014_H08.ab1: 55571-58025

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004958_050 0.0 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
2 Hb_002234_210 0.0752556742 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
3 Hb_011689_050 0.0930745082 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
4 Hb_001616_020 0.099532654 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
5 Hb_000634_050 0.1021938177 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
6 Hb_000526_150 0.1051250604 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
7 Hb_003638_080 0.1127803096 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
8 Hb_150299_030 0.1129118378 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002781_020 0.1142038528 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
10 Hb_002293_030 0.1164249418 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
11 Hb_002897_080 0.1220182629 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
12 Hb_003607_170 0.1259573373 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
13 Hb_003058_070 0.1266041153 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
14 Hb_000144_110 0.1273724317 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
15 Hb_000963_030 0.1279394601 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
16 Hb_000134_020 0.1286386787 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_009252_130 0.1288448399 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
18 Hb_000057_070 0.1295667879 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
19 Hb_001045_080 0.1298576974 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
20 Hb_000045_190 0.1322941373 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]

Gene co-expression network

sample Hb_004958_050 Hb_004958_050 Hb_002234_210 Hb_002234_210 Hb_004958_050--Hb_002234_210 Hb_011689_050 Hb_011689_050 Hb_004958_050--Hb_011689_050 Hb_001616_020 Hb_001616_020 Hb_004958_050--Hb_001616_020 Hb_000634_050 Hb_000634_050 Hb_004958_050--Hb_000634_050 Hb_000526_150 Hb_000526_150 Hb_004958_050--Hb_000526_150 Hb_003638_080 Hb_003638_080 Hb_004958_050--Hb_003638_080 Hb_002234_210--Hb_000634_050 Hb_003058_070 Hb_003058_070 Hb_002234_210--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_002234_210--Hb_000417_110 Hb_000190_060 Hb_000190_060 Hb_002234_210--Hb_000190_060 Hb_009252_130 Hb_009252_130 Hb_002234_210--Hb_009252_130 Hb_000963_030 Hb_000963_030 Hb_011689_050--Hb_000963_030 Hb_011689_050--Hb_001616_020 Hb_001123_120 Hb_001123_120 Hb_011689_050--Hb_001123_120 Hb_000161_050 Hb_000161_050 Hb_011689_050--Hb_000161_050 Hb_000144_110 Hb_000144_110 Hb_011689_050--Hb_000144_110 Hb_001616_020--Hb_009252_130 Hb_001616_020--Hb_002234_210 Hb_001616_020--Hb_000144_110 Hb_151930_020 Hb_151930_020 Hb_001616_020--Hb_151930_020 Hb_000634_050--Hb_000417_110 Hb_000045_190 Hb_000045_190 Hb_000634_050--Hb_000045_190 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030 Hb_000634_050--Hb_000526_150 Hb_001269_270 Hb_001269_270 Hb_000526_150--Hb_001269_270 Hb_001638_260 Hb_001638_260 Hb_000526_150--Hb_001638_260 Hb_009851_100 Hb_009851_100 Hb_000526_150--Hb_009851_100 Hb_000545_150 Hb_000545_150 Hb_000526_150--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_000526_150--Hb_001818_020 Hb_000699_040 Hb_000699_040 Hb_003638_080--Hb_000699_040 Hb_000134_020 Hb_000134_020 Hb_003638_080--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_003638_080--Hb_000236_460 Hb_000617_050 Hb_000617_050 Hb_003638_080--Hb_000617_050 Hb_001053_160 Hb_001053_160 Hb_003638_080--Hb_001053_160 Hb_001214_140 Hb_001214_140 Hb_003638_080--Hb_001214_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
401.033 77.8535 93.4972 69.1981 210.874 299.744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
734.609 1077.35 187.933 102.601 24.4409

CAGE analysis