Hb_004963_020

Information

Type -
Description -
Location Contig4963: 39799-41985
Sequence    

Annotation

kegg
ID pop:POPTR_0001s46570g
description POPTRDRAFT_1070591; hypothetical protein
nr
ID XP_011039291.1
description PREDICTED: patellin-4 [Populus euphratica]
swissprot
ID Q94C59
description Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2
trembl
ID B9GGH8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s46570g PE=4 SV=1
Gene Ontology
ID GO:0016021
description patellin-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45479: 39746-41450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004963_020 0.0 - - PREDICTED: patellin-4 [Populus euphratica]
2 Hb_002473_030 0.064966248 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
3 Hb_000316_070 0.0655756785 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
4 Hb_001168_030 0.0700775785 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
5 Hb_001864_040 0.0713941535 - - PREDICTED: kinesin-1 [Jatropha curcas]
6 Hb_002837_030 0.0758563692 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005649_050 0.0762636873 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001454_180 0.0845194824 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
9 Hb_004032_390 0.0847080298 - - CDK, putative [Ricinus communis]
10 Hb_004102_090 0.0884670109 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
11 Hb_000441_210 0.0907352782 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
12 Hb_004635_020 0.093334067 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
13 Hb_000028_530 0.0949144745 - - Protein regulator of cytokinesis, putative [Ricinus communis]
14 Hb_000614_200 0.0949733742 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
15 Hb_003398_050 0.0963691609 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
16 Hb_010705_040 0.0977606395 - - PREDICTED: kinesin-4 [Jatropha curcas]
17 Hb_002374_090 0.0993721745 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
18 Hb_003776_050 0.099461347 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
19 Hb_162378_020 0.1009660764 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
20 Hb_001699_070 0.1009967145 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004963_020 Hb_004963_020 Hb_002473_030 Hb_002473_030 Hb_004963_020--Hb_002473_030 Hb_000316_070 Hb_000316_070 Hb_004963_020--Hb_000316_070 Hb_001168_030 Hb_001168_030 Hb_004963_020--Hb_001168_030 Hb_001864_040 Hb_001864_040 Hb_004963_020--Hb_001864_040 Hb_002837_030 Hb_002837_030 Hb_004963_020--Hb_002837_030 Hb_005649_050 Hb_005649_050 Hb_004963_020--Hb_005649_050 Hb_002473_030--Hb_005649_050 Hb_004032_390 Hb_004032_390 Hb_002473_030--Hb_004032_390 Hb_001220_020 Hb_001220_020 Hb_002473_030--Hb_001220_020 Hb_002473_030--Hb_002837_030 Hb_003398_050 Hb_003398_050 Hb_002473_030--Hb_003398_050 Hb_011849_010 Hb_011849_010 Hb_000316_070--Hb_011849_010 Hb_004635_020 Hb_004635_020 Hb_000316_070--Hb_004635_020 Hb_000614_200 Hb_000614_200 Hb_000316_070--Hb_000614_200 Hb_000316_070--Hb_004032_390 Hb_007245_030 Hb_007245_030 Hb_000316_070--Hb_007245_030 Hb_001168_030--Hb_007245_030 Hb_001168_030--Hb_000316_070 Hb_005914_100 Hb_005914_100 Hb_001168_030--Hb_005914_100 Hb_001168_030--Hb_000614_200 Hb_003776_050 Hb_003776_050 Hb_001168_030--Hb_003776_050 Hb_001864_040--Hb_000316_070 Hb_007558_110 Hb_007558_110 Hb_001864_040--Hb_007558_110 Hb_001864_040--Hb_002473_030 Hb_001864_040--Hb_004635_020 Hb_033152_060 Hb_033152_060 Hb_001864_040--Hb_033152_060 Hb_002837_030--Hb_005649_050 Hb_002837_030--Hb_004032_390 Hb_001564_100 Hb_001564_100 Hb_002837_030--Hb_001564_100 Hb_162378_020 Hb_162378_020 Hb_002837_030--Hb_162378_020 Hb_002197_010 Hb_002197_010 Hb_005649_050--Hb_002197_010 Hb_001210_030 Hb_001210_030 Hb_005649_050--Hb_001210_030 Hb_005649_050--Hb_162378_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17118 3.24571 122.024 37.387 1.21856 0.284166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147698 0.561681 0.403124 5.37497 4.00172

CAGE analysis