Hb_004965_050

Information

Type -
Description -
Location Contig4965: 75863-82344
Sequence    

Annotation

kegg
ID rcu:RCOM_0255530
description hypothetical protein
nr
ID XP_012085944.1
description PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K358
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22445 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45483: 79409-80233 , PASA_asmbl_45484: 79400-81187
cDNA
(Sanger)
(ID:Location)		 027_M20.ab1: 79409-80029 , 033_H05.ab1: 79409-80107

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004965_050 0.0 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
2 Hb_002685_200 0.1460757228 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
3 Hb_000179_240 0.1563194501 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
4 Hb_003077_050 0.1585825851 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
5 Hb_000072_190 0.1769665109 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
6 Hb_004117_170 0.1784994211 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
7 Hb_171900_020 0.1838418444 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
8 Hb_000749_070 0.1840268673 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
9 Hb_007253_010 0.1844294444 - - syntaxin, putative [Ricinus communis]
10 Hb_006909_060 0.1854906709 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
11 Hb_002849_140 0.1893949789 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
12 Hb_159809_050 0.1914394048 - - AT14A, putative [Ricinus communis]
13 Hb_031822_010 0.191870231 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
14 Hb_013358_020 0.1956951738 - - ccr4-associated factor, putative [Ricinus communis]
15 Hb_128524_020 0.1959905156 - - PREDICTED: aspartic proteinase-like protein 2 isoform X2 [Jatropha curcas]
16 Hb_005545_070 0.2021415257 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
17 Hb_001123_200 0.2030780736 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002053_130 0.2049064836 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
19 Hb_012634_020 0.2058387598 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
20 Hb_005663_070 0.2082145512 - - dehydrin protein [Manihot esculenta]

Gene co-expression network

sample Hb_004965_050 Hb_004965_050 Hb_002685_200 Hb_002685_200 Hb_004965_050--Hb_002685_200 Hb_000179_240 Hb_000179_240 Hb_004965_050--Hb_000179_240 Hb_003077_050 Hb_003077_050 Hb_004965_050--Hb_003077_050 Hb_000072_190 Hb_000072_190 Hb_004965_050--Hb_000072_190 Hb_004117_170 Hb_004117_170 Hb_004965_050--Hb_004117_170 Hb_171900_020 Hb_171900_020 Hb_004965_050--Hb_171900_020 Hb_002685_200--Hb_000179_240 Hb_001638_030 Hb_001638_030 Hb_002685_200--Hb_001638_030 Hb_012634_020 Hb_012634_020 Hb_002685_200--Hb_012634_020 Hb_002685_200--Hb_003077_050 Hb_002701_210 Hb_002701_210 Hb_002685_200--Hb_002701_210 Hb_000084_240 Hb_000084_240 Hb_002685_200--Hb_000084_240 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_002053_130 Hb_002053_130 Hb_000179_240--Hb_002053_130 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_002205_010 Hb_002205_010 Hb_000179_240--Hb_002205_010 Hb_000069_330 Hb_000069_330 Hb_003077_050--Hb_000069_330 Hb_003077_050--Hb_004117_170 Hb_000077_390 Hb_000077_390 Hb_003077_050--Hb_000077_390 Hb_001484_020 Hb_001484_020 Hb_003077_050--Hb_001484_020 Hb_003077_050--Hb_000186_200 Hb_013358_020 Hb_013358_020 Hb_000072_190--Hb_013358_020 Hb_084849_010 Hb_084849_010 Hb_000072_190--Hb_084849_010 Hb_031822_010 Hb_031822_010 Hb_000072_190--Hb_031822_010 Hb_000749_070 Hb_000749_070 Hb_000072_190--Hb_000749_070 Hb_006018_050 Hb_006018_050 Hb_000072_190--Hb_006018_050 Hb_004631_200 Hb_004631_200 Hb_000072_190--Hb_004631_200 Hb_000035_050 Hb_000035_050 Hb_004117_170--Hb_000035_050 Hb_004117_170--Hb_013358_020 Hb_018790_050 Hb_018790_050 Hb_004117_170--Hb_018790_050 Hb_007253_010 Hb_007253_010 Hb_004117_170--Hb_007253_010 Hb_004117_170--Hb_000749_070 Hb_001376_010 Hb_001376_010 Hb_004117_170--Hb_001376_010 Hb_005146_080 Hb_005146_080 Hb_171900_020--Hb_005146_080 Hb_171900_020--Hb_004117_170 Hb_002042_170 Hb_002042_170 Hb_171900_020--Hb_002042_170 Hb_003925_040 Hb_003925_040 Hb_171900_020--Hb_003925_040 Hb_001235_170 Hb_001235_170 Hb_171900_020--Hb_001235_170 Hb_171900_020--Hb_002053_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.538 193.096 126.068 88.4144 16.6521 19.0165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.833 60.9331 83.4372 6.27893 8.41961

CAGE analysis