Hb_004965_080

Information

Type -
Description -
Location Contig4965: 123297-130764
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04140g
description POPTRDRAFT_734840; GCN5-related N-acetyltransferase family protein
nr
ID KHG03376.1
description hypothetical protein F383_09654 [Gossypium arboreum]
swissprot
ID Q5XV99
description Glycosyltransferase-like At3g57200 OS=Arabidopsis thaliana GN=At3g57200 PE=2 SV=1
trembl
ID A0A0B0MWS7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_09654 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45492: 124083-126207 , PASA_asmbl_45493: 124542-126122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004965_080 0.0 - - hypothetical protein F383_09654 [Gossypium arboreum]
2 Hb_056196_060 0.1381025973 - - hexokinase [Manihot esculenta]
3 Hb_143766_030 0.1389279763 - - protein with unknown function [Ricinus communis]
4 Hb_002387_040 0.1397731277 - - protein transporter, putative [Ricinus communis]
5 Hb_000815_310 0.1439986825 - - protein kinase, putative [Ricinus communis]
6 Hb_002965_050 0.1446205479 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
7 Hb_010068_070 0.1446317267 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_000711_010 0.1449100721 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
9 Hb_004128_030 0.1453752759 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
10 Hb_000116_210 0.1469645053 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
11 Hb_002900_120 0.1472254194 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
12 Hb_000417_300 0.1475088462 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
13 Hb_001376_010 0.1482078844 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
14 Hb_000156_090 0.1484327289 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
15 Hb_002849_070 0.1486221723 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
16 Hb_000418_050 0.1503935442 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
17 Hb_002804_010 0.1509135914 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
18 Hb_004724_330 0.1516625447 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
19 Hb_000200_170 0.1516992033 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
20 Hb_003540_250 0.1526063448 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004965_080 Hb_004965_080 Hb_056196_060 Hb_056196_060 Hb_004965_080--Hb_056196_060 Hb_143766_030 Hb_143766_030 Hb_004965_080--Hb_143766_030 Hb_002387_040 Hb_002387_040 Hb_004965_080--Hb_002387_040 Hb_000815_310 Hb_000815_310 Hb_004965_080--Hb_000815_310 Hb_002965_050 Hb_002965_050 Hb_004965_080--Hb_002965_050 Hb_010068_070 Hb_010068_070 Hb_004965_080--Hb_010068_070 Hb_003670_030 Hb_003670_030 Hb_056196_060--Hb_003670_030 Hb_018790_050 Hb_018790_050 Hb_056196_060--Hb_018790_050 Hb_000035_050 Hb_000035_050 Hb_056196_060--Hb_000035_050 Hb_008112_010 Hb_008112_010 Hb_056196_060--Hb_008112_010 Hb_000009_200 Hb_000009_200 Hb_056196_060--Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_056196_060--Hb_005714_100 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_000200_170 Hb_000200_170 Hb_143766_030--Hb_000200_170 Hb_000735_140 Hb_000735_140 Hb_143766_030--Hb_000735_140 Hb_023344_110 Hb_023344_110 Hb_143766_030--Hb_023344_110 Hb_000069_780 Hb_000069_780 Hb_143766_030--Hb_000069_780 Hb_002387_040--Hb_002248_120 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_024714_070 Hb_024714_070 Hb_002387_040--Hb_024714_070 Hb_000418_050 Hb_000418_050 Hb_002387_040--Hb_000418_050 Hb_005288_050 Hb_005288_050 Hb_002387_040--Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_002387_040--Hb_002804_010 Hb_003540_250 Hb_003540_250 Hb_000815_310--Hb_003540_250 Hb_003777_130 Hb_003777_130 Hb_000815_310--Hb_003777_130 Hb_033152_090 Hb_033152_090 Hb_000815_310--Hb_033152_090 Hb_000815_310--Hb_002965_050 Hb_007416_260 Hb_007416_260 Hb_000815_310--Hb_007416_260 Hb_002876_210 Hb_002876_210 Hb_000815_310--Hb_002876_210 Hb_000156_090 Hb_000156_090 Hb_002965_050--Hb_000156_090 Hb_002965_050--Hb_002876_210 Hb_002900_120 Hb_002900_120 Hb_002965_050--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_002965_050--Hb_060094_010 Hb_000711_010 Hb_000711_010 Hb_002965_050--Hb_000711_010 Hb_009372_020 Hb_009372_020 Hb_010068_070--Hb_009372_020 Hb_010068_070--Hb_060094_010 Hb_000890_160 Hb_000890_160 Hb_010068_070--Hb_000890_160 Hb_010068_070--Hb_000156_090 Hb_033363_010 Hb_033363_010 Hb_010068_070--Hb_033363_010 Hb_010068_070--Hb_002965_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0485004 0.963497 0.611841 0.591802 0.0741042 0.179661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.266544 0.0698853 0.194218 0.280367 0.359981

CAGE analysis