Hb_004965_110

Information

Type -
Description -
Location Contig4965: 161253-178735
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04390g
description POPTRDRAFT_560447; hypothetical protein
nr
ID XP_012085952.1
description PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
swissprot
ID F4J2K2
description Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS2 PE=1 SV=1
trembl
ID A0A067K370
description Folylpolyglutamate synthase OS=Jatropha curcas GN=JCGZ_22450 PE=3 SV=1
Gene Ontology
ID GO:0004326
description folylpolyglutamate synthase-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45496: 161260-168970 , PASA_asmbl_45497: 170512-170948 , PASA_asmbl_45498: 175393-176362 , PASA_asmbl_45499: 176802-177754 , PASA_asmbl_45500: 177779-178005
cDNA
(Sanger)
(ID:Location)		 019_C06.ab1: 161260-161553

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004965_110 0.0 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
2 Hb_003266_030 0.0606587754 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
3 Hb_007904_230 0.0763908392 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
4 Hb_011671_260 0.0767036324 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
5 Hb_006132_090 0.0775727176 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
6 Hb_000926_080 0.0786465191 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
7 Hb_001900_140 0.0823061315 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
8 Hb_000200_300 0.0827390536 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
9 Hb_005167_010 0.0849736422 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
10 Hb_000189_570 0.0864762265 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
11 Hb_003119_060 0.0865284534 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
12 Hb_000086_080 0.086822447 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005016_040 0.0887028071 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
14 Hb_004218_010 0.0892255126 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_007192_030 0.0905149505 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
16 Hb_000926_200 0.0930474659 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
17 Hb_000832_190 0.0938116629 - - Rab3 [Hevea brasiliensis]
18 Hb_000080_130 0.094345975 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
19 Hb_002157_120 0.0956404318 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000811_070 0.098349095 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]

Gene co-expression network

sample Hb_004965_110 Hb_004965_110 Hb_003266_030 Hb_003266_030 Hb_004965_110--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_004965_110--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_004965_110--Hb_011671_260 Hb_006132_090 Hb_006132_090 Hb_004965_110--Hb_006132_090 Hb_000926_080 Hb_000926_080 Hb_004965_110--Hb_000926_080 Hb_001900_140 Hb_001900_140 Hb_004965_110--Hb_001900_140 Hb_003266_030--Hb_007904_230 Hb_003266_030--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_003266_030--Hb_000926_080 Hb_000364_050 Hb_000364_050 Hb_007904_230--Hb_000364_050 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_049575_010 Hb_049575_010 Hb_007904_230--Hb_049575_010 Hb_002631_240 Hb_002631_240 Hb_011671_260--Hb_002631_240 Hb_073973_090 Hb_073973_090 Hb_011671_260--Hb_073973_090 Hb_000167_110 Hb_000167_110 Hb_011671_260--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_011671_260--Hb_006907_060 Hb_005167_010 Hb_005167_010 Hb_006132_090--Hb_005167_010 Hb_006132_090--Hb_001900_140 Hb_003878_090 Hb_003878_090 Hb_006132_090--Hb_003878_090 Hb_002157_120 Hb_002157_120 Hb_006132_090--Hb_002157_120 Hb_007002_020 Hb_007002_020 Hb_006132_090--Hb_007002_020 Hb_003119_060 Hb_003119_060 Hb_006132_090--Hb_003119_060 Hb_000200_300 Hb_000200_300 Hb_000926_080--Hb_000200_300 Hb_000926_080--Hb_000086_080 Hb_000926_080--Hb_006907_060 Hb_027506_040 Hb_027506_040 Hb_000926_080--Hb_027506_040 Hb_001587_180 Hb_001587_180 Hb_001900_140--Hb_001587_180 Hb_007558_090 Hb_007558_090 Hb_001900_140--Hb_007558_090 Hb_001900_140--Hb_003266_030 Hb_001900_140--Hb_007904_230 Hb_005946_040 Hb_005946_040 Hb_001900_140--Hb_005946_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62938 3.00132 10.5771 8.15074 2.0268 3.01123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65835 7.18387 5.69055 3.12288 7.53193

CAGE analysis