Hb_004968_010

Information

Type -
Description -
Location Contig4968: 11068-14887
Sequence    

Annotation

kegg
ID rcu:RCOM_0206530
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_011043730.1
description PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
swissprot
ID Q9FL28
description LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1
trembl
ID B9T8M3
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0206530 PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45501: 11507-11869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004968_010 0.0 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
2 Hb_099990_030 0.2150224231 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_002235_180 0.2452335727 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
4 Hb_001124_030 0.254049674 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
5 Hb_000787_010 0.2547130678 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
6 Hb_003292_060 0.273463367 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
7 Hb_000663_030 0.2832192232 - - -
8 Hb_001277_190 0.2885913157 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
9 Hb_005464_030 0.2986926854 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_114250_010 0.2991913636 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000624_020 0.2999087328 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
12 Hb_015928_020 0.3028090672 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
13 Hb_000982_150 0.305043184 transcription factor TF Family: Orphans histidine kinase 1 plant, putative [Ricinus communis]
14 Hb_002234_230 0.3095783714 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
15 Hb_001622_010 0.3098694358 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_068347_010 0.3104216622 - - -
17 Hb_061466_020 0.3152694409 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_036693_010 0.3228168787 - - -
19 Hb_167508_010 0.3230729506 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
20 Hb_000589_370 0.3249565246 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]

Gene co-expression network

sample Hb_004968_010 Hb_004968_010 Hb_099990_030 Hb_099990_030 Hb_004968_010--Hb_099990_030 Hb_002235_180 Hb_002235_180 Hb_004968_010--Hb_002235_180 Hb_001124_030 Hb_001124_030 Hb_004968_010--Hb_001124_030 Hb_000787_010 Hb_000787_010 Hb_004968_010--Hb_000787_010 Hb_003292_060 Hb_003292_060 Hb_004968_010--Hb_003292_060 Hb_000663_030 Hb_000663_030 Hb_004968_010--Hb_000663_030 Hb_099990_030--Hb_000787_010 Hb_004524_070 Hb_004524_070 Hb_099990_030--Hb_004524_070 Hb_167508_010 Hb_167508_010 Hb_099990_030--Hb_167508_010 Hb_061466_020 Hb_061466_020 Hb_099990_030--Hb_061466_020 Hb_161023_010 Hb_161023_010 Hb_099990_030--Hb_161023_010 Hb_002235_180--Hb_000787_010 Hb_000803_250 Hb_000803_250 Hb_002235_180--Hb_000803_250 Hb_002235_180--Hb_099990_030 Hb_000661_280 Hb_000661_280 Hb_002235_180--Hb_000661_280 Hb_001004_050 Hb_001004_050 Hb_002235_180--Hb_001004_050 Hb_001124_030--Hb_003292_060 Hb_002234_230 Hb_002234_230 Hb_001124_030--Hb_002234_230 Hb_009302_010 Hb_009302_010 Hb_001124_030--Hb_009302_010 Hb_000589_370 Hb_000589_370 Hb_001124_030--Hb_000589_370 Hb_004117_250 Hb_004117_250 Hb_001124_030--Hb_004117_250 Hb_004021_090 Hb_004021_090 Hb_000787_010--Hb_004021_090 Hb_003768_060 Hb_003768_060 Hb_000787_010--Hb_003768_060 Hb_028639_040 Hb_028639_040 Hb_000787_010--Hb_028639_040 Hb_000787_010--Hb_000589_370 Hb_003292_060--Hb_000589_370 Hb_003292_060--Hb_002234_230 Hb_003292_060--Hb_004117_250 Hb_004524_060 Hb_004524_060 Hb_003292_060--Hb_004524_060 Hb_003292_060--Hb_000787_010 Hb_000347_090 Hb_000347_090 Hb_000663_030--Hb_000347_090 Hb_011903_010 Hb_011903_010 Hb_000663_030--Hb_011903_010 Hb_000624_020 Hb_000624_020 Hb_000663_030--Hb_000624_020 Hb_121304_020 Hb_121304_020 Hb_000663_030--Hb_121304_020 Hb_122259_010 Hb_122259_010 Hb_000663_030--Hb_122259_010 Hb_144547_010 Hb_144547_010 Hb_000663_030--Hb_144547_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01163 0.77231 0.412669 0.133748 0.0544623 0.0514146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0572671 0

CAGE analysis