Hb_004968_060

Information

Type -
Description -
Location Contig4968: 65673-68156
Sequence    

Annotation

kegg
ID rcu:RCOM_1483210
description hypothetical protein
nr
ID XP_002524255.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SE36
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1483210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45505: 65673-68099 , PASA_asmbl_45506: 65672-67851 , PASA_asmbl_45507: 67068-67540
cDNA
(Sanger)
(ID:Location)		 012_G09.ab1: 65672-67644 , 025_P22.ab1: 65700-67781

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004968_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003327_060 0.1140513464 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
3 Hb_138413_010 0.13098587 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
4 Hb_004223_200 0.1477495429 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
5 Hb_000914_060 0.1500441493 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
6 Hb_000563_530 0.150648119 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
7 Hb_002200_120 0.1508437468 - - conserved hypothetical protein [Ricinus communis]
8 Hb_033448_010 0.1512283172 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
9 Hb_008725_200 0.1579821505 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
10 Hb_068946_010 0.1614739379 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
11 Hb_000300_010 0.1625016513 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_000366_100 0.1633389608 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
13 Hb_027445_060 0.163554391 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
14 Hb_000184_120 0.1653933637 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
15 Hb_077562_040 0.1679178064 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
16 Hb_002368_040 0.1710085278 - - hypothetical protein PRUPE_ppa019172mg [Prunus persica]
17 Hb_134789_010 0.1724771978 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
18 Hb_000032_540 0.1764487104 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
19 Hb_000189_530 0.1805453946 - - 40S ribosomal protein S24B [Hevea brasiliensis]
20 Hb_000330_170 0.1808078298 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]

Gene co-expression network

sample Hb_004968_060 Hb_004968_060 Hb_003327_060 Hb_003327_060 Hb_004968_060--Hb_003327_060 Hb_138413_010 Hb_138413_010 Hb_004968_060--Hb_138413_010 Hb_004223_200 Hb_004223_200 Hb_004968_060--Hb_004223_200 Hb_000914_060 Hb_000914_060 Hb_004968_060--Hb_000914_060 Hb_000563_530 Hb_000563_530 Hb_004968_060--Hb_000563_530 Hb_002200_120 Hb_002200_120 Hb_004968_060--Hb_002200_120 Hb_003327_060--Hb_000914_060 Hb_003327_060--Hb_138413_010 Hb_000155_070 Hb_000155_070 Hb_003327_060--Hb_000155_070 Hb_000933_140 Hb_000933_140 Hb_003327_060--Hb_000933_140 Hb_005730_020 Hb_005730_020 Hb_003327_060--Hb_005730_020 Hb_014067_010 Hb_014067_010 Hb_138413_010--Hb_014067_010 Hb_138413_010--Hb_000933_140 Hb_026048_090 Hb_026048_090 Hb_138413_010--Hb_026048_090 Hb_003627_020 Hb_003627_020 Hb_138413_010--Hb_003627_020 Hb_002067_160 Hb_002067_160 Hb_138413_010--Hb_002067_160 Hb_008725_200 Hb_008725_200 Hb_004223_200--Hb_008725_200 Hb_004223_200--Hb_002200_120 Hb_000300_010 Hb_000300_010 Hb_004223_200--Hb_000300_010 Hb_004223_200--Hb_000563_530 Hb_017711_010 Hb_017711_010 Hb_004223_200--Hb_017711_010 Hb_000914_060--Hb_000155_070 Hb_000603_200 Hb_000603_200 Hb_000914_060--Hb_000603_200 Hb_000914_060--Hb_003627_020 Hb_000061_410 Hb_000061_410 Hb_000914_060--Hb_000061_410 Hb_001892_150 Hb_001892_150 Hb_000914_060--Hb_001892_150 Hb_033448_010 Hb_033448_010 Hb_000563_530--Hb_033448_010 Hb_000184_120 Hb_000184_120 Hb_000563_530--Hb_000184_120 Hb_000563_530--Hb_002200_120 Hb_077562_040 Hb_077562_040 Hb_000563_530--Hb_077562_040 Hb_000369_090 Hb_000369_090 Hb_000563_530--Hb_000369_090 Hb_000366_100 Hb_000366_100 Hb_000563_530--Hb_000366_100 Hb_002200_120--Hb_000184_120 Hb_000330_170 Hb_000330_170 Hb_002200_120--Hb_000330_170 Hb_002200_120--Hb_033448_010 Hb_002200_120--Hb_000369_090 Hb_000061_160 Hb_000061_160 Hb_002200_120--Hb_000061_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
197.611 4.60677 1.81013 12.4166 92.3604 325.574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.393 243.357 89.0822 14.1299 0.683849

CAGE analysis