Hb_004970_160

Information

Type -
Description -
Location Contig4970: 125854-131356
Sequence    

Annotation

kegg
ID rcu:RCOM_1590240
description fms interacting protein, putative
nr
ID XP_012071652.1
description PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
swissprot
ID F4K4J0
description THO complex subunit 5B OS=Arabidopsis thaliana GN=THO5B PE=1 SV=1
trembl
ID A0A067L2L0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04254 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45557: 125892-131275 , PASA_asmbl_45558: 125892-128485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_160 0.0 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
2 Hb_000120_620 0.0566685473 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
3 Hb_004899_070 0.0572247308 - - PREDICTED: RRP12-like protein [Jatropha curcas]
4 Hb_005462_020 0.0668945068 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
5 Hb_001028_070 0.0697840684 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
6 Hb_000594_020 0.0713961271 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
7 Hb_000120_610 0.0740231226 - - mitotic control protein dis3, putative [Ricinus communis]
8 Hb_000261_290 0.0746876802 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
9 Hb_000098_130 0.0761119724 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
10 Hb_000487_220 0.0771861024 - - eukaryotic translation elongation factor, putative [Ricinus communis]
11 Hb_000264_100 0.0777834627 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010315_090 0.0781046102 - - suppressor of ty, putative [Ricinus communis]
13 Hb_000504_150 0.0792170981 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
14 Hb_000329_130 0.0792485159 - - beta-tubulin cofactor d, putative [Ricinus communis]
15 Hb_140049_020 0.080127957 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
16 Hb_017895_020 0.0812021303 - - Vacuolar protein sorting protein, putative [Ricinus communis]
17 Hb_000813_100 0.0812290931 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
18 Hb_006588_050 0.0812350261 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
19 Hb_000313_340 0.0815740981 - - DNA repair protein xp-E, putative [Ricinus communis]
20 Hb_147737_010 0.0826017424 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004970_160 Hb_004970_160 Hb_000120_620 Hb_000120_620 Hb_004970_160--Hb_000120_620 Hb_004899_070 Hb_004899_070 Hb_004970_160--Hb_004899_070 Hb_005462_020 Hb_005462_020 Hb_004970_160--Hb_005462_020 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070 Hb_000594_020 Hb_000594_020 Hb_004970_160--Hb_000594_020 Hb_000120_610 Hb_000120_610 Hb_004970_160--Hb_000120_610 Hb_000120_620--Hb_004899_070 Hb_000098_130 Hb_000098_130 Hb_000120_620--Hb_000098_130 Hb_003097_180 Hb_003097_180 Hb_000120_620--Hb_003097_180 Hb_000261_290 Hb_000261_290 Hb_000120_620--Hb_000261_290 Hb_001178_150 Hb_001178_150 Hb_000120_620--Hb_001178_150 Hb_004899_070--Hb_000098_130 Hb_004899_070--Hb_000261_290 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_078477_040 Hb_078477_040 Hb_005462_020--Hb_078477_040 Hb_006829_090 Hb_006829_090 Hb_005462_020--Hb_006829_090 Hb_006002_030 Hb_006002_030 Hb_005462_020--Hb_006002_030 Hb_022250_110 Hb_022250_110 Hb_005462_020--Hb_022250_110 Hb_005462_020--Hb_000120_620 Hb_001221_150 Hb_001221_150 Hb_001028_070--Hb_001221_150 Hb_000567_010 Hb_000567_010 Hb_001028_070--Hb_000567_010 Hb_000136_090 Hb_000136_090 Hb_001028_070--Hb_000136_090 Hb_001028_070--Hb_000120_610 Hb_001417_050 Hb_001417_050 Hb_001028_070--Hb_001417_050 Hb_000594_020--Hb_000120_610 Hb_000594_020--Hb_000813_100 Hb_002659_060 Hb_002659_060 Hb_000594_020--Hb_002659_060 Hb_000594_020--Hb_004899_070 Hb_002411_120 Hb_002411_120 Hb_000594_020--Hb_002411_120 Hb_000264_100 Hb_000264_100 Hb_000120_610--Hb_000264_100 Hb_000120_610--Hb_002659_060 Hb_140049_020 Hb_140049_020 Hb_000120_610--Hb_140049_020 Hb_000120_610--Hb_004899_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.7755 36.7595 16.0149 15.5666 55.6981 55.3783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2853 8.74032 11.0136 30.095 17.6281

CAGE analysis