Hb_004970_190

Information

Type -
Description -
Location Contig4970: 141276-144357
Sequence    

Annotation

kegg
ID rcu:RCOM_1590270
description DCL protein, chloroplast precursor, putative
nr
ID XP_002510210.1
description DCL protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q42463
description Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1
trembl
ID B9R7B7
description DCL protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1590270 PE=4 SV=1
Gene Ontology
ID GO:0005507
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45564: 141040-141367 , PASA_asmbl_45565: 141912-144367 , PASA_asmbl_45566: 141616-144367
cDNA
(Sanger)
(ID:Location)		 026_B11.ab1: 141853-144367 , 051_K06.ab1: 141783-144367

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_190 0.0 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_012395_230 0.0529605356 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
3 Hb_000205_190 0.0560535657 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
4 Hb_007007_120 0.0613885082 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
5 Hb_003513_010 0.0616811072 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
6 Hb_000869_020 0.0619010791 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
7 Hb_000753_240 0.0622338249 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
8 Hb_000804_040 0.0637434084 - - protein with unknown function [Ricinus communis]
9 Hb_000053_110 0.0662663156 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000866_010 0.0695355331 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001001_080 0.0698976636 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
12 Hb_007657_010 0.0711663982 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000331_110 0.0721838013 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
14 Hb_003029_070 0.0729673018 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_004052_080 0.0734116389 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002780_020 0.0736347863 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Jatropha curcas]
17 Hb_000699_030 0.0772015758 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
18 Hb_002013_020 0.0775034798 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
19 Hb_000866_260 0.079104797 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
20 Hb_000245_220 0.0794709288 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]

Gene co-expression network

sample Hb_004970_190 Hb_004970_190 Hb_012395_230 Hb_012395_230 Hb_004970_190--Hb_012395_230 Hb_000205_190 Hb_000205_190 Hb_004970_190--Hb_000205_190 Hb_007007_120 Hb_007007_120 Hb_004970_190--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004970_190--Hb_003513_010 Hb_000869_020 Hb_000869_020 Hb_004970_190--Hb_000869_020 Hb_000753_240 Hb_000753_240 Hb_004970_190--Hb_000753_240 Hb_000053_110 Hb_000053_110 Hb_012395_230--Hb_000053_110 Hb_008642_040 Hb_008642_040 Hb_012395_230--Hb_008642_040 Hb_002780_020 Hb_002780_020 Hb_012395_230--Hb_002780_020 Hb_000883_020 Hb_000883_020 Hb_012395_230--Hb_000883_020 Hb_012395_230--Hb_003513_010 Hb_001158_070 Hb_001158_070 Hb_000205_190--Hb_001158_070 Hb_000804_040 Hb_000804_040 Hb_000205_190--Hb_000804_040 Hb_008165_060 Hb_008165_060 Hb_000205_190--Hb_008165_060 Hb_001001_080 Hb_001001_080 Hb_000205_190--Hb_001001_080 Hb_000205_190--Hb_007007_120 Hb_004052_080 Hb_004052_080 Hb_007007_120--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_007007_120--Hb_003428_010 Hb_002876_230 Hb_002876_230 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_007007_120--Hb_003513_010 Hb_000339_040 Hb_000339_040 Hb_007007_120--Hb_000339_040 Hb_003513_010--Hb_004052_080 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_014834_150 Hb_014834_150 Hb_003513_010--Hb_014834_150 Hb_003513_010--Hb_000869_020 Hb_003861_060 Hb_003861_060 Hb_003513_010--Hb_003861_060 Hb_000869_020--Hb_004052_080 Hb_000869_020--Hb_003861_060 Hb_000869_020--Hb_007007_120 Hb_005588_080 Hb_005588_080 Hb_000869_020--Hb_005588_080 Hb_003029_070 Hb_003029_070 Hb_000753_240--Hb_003029_070 Hb_000866_010 Hb_000866_010 Hb_000753_240--Hb_000866_010 Hb_000866_260 Hb_000866_260 Hb_000753_240--Hb_000866_260 Hb_002013_020 Hb_002013_020 Hb_000753_240--Hb_002013_020 Hb_000753_240--Hb_000804_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.9764 21.3247 37.3526 21.1258 25.4414 28.5066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1912 29.4903 24.1331 17.5785 36.1049

CAGE analysis