Hb_004970_200

Information

Type -
Description -
Location Contig4970: 146104-152198
Sequence    

Annotation

kegg
ID rcu:RCOM_1590280
description serine/threonine-protein kinase, putative (EC:2.7.11.13)
nr
ID XP_002510211.1
description serine/threonine-protein kinase, putative [Ricinus communis]
swissprot
ID Q9NBK5
description Serine/threonine-protein kinase tricorner OS=Drosophila melanogaster GN=trc PE=1 SV=1
trembl
ID B9R7B8
description Serine/threonine-protein kinase, putative OS=Ricinus communis GN=RCOM_1590280 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase tricorner

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45567: 146158-152167 , PASA_asmbl_45568: 146956-147301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_200 0.0 - - serine/threonine-protein kinase, putative [Ricinus communis]
2 Hb_002973_080 0.0931826931 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
3 Hb_002659_140 0.1014111029 - - hypothetical protein JCGZ_08031 [Jatropha curcas]
4 Hb_000107_390 0.1053419878 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
5 Hb_005333_040 0.1064850718 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
6 Hb_000538_020 0.107741501 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
7 Hb_001001_160 0.1117831055 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
8 Hb_002377_040 0.1122164578 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_000771_110 0.113214813 - - protein phosphatase 2C [Hevea brasiliensis]
10 Hb_000172_120 0.1137015355 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
11 Hb_000001_020 0.1143842242 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
12 Hb_000025_200 0.1155265334 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
13 Hb_000329_690 0.1166412704 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
14 Hb_168918_020 0.117135687 - - pectin acetylesterase, putative [Ricinus communis]
15 Hb_000733_060 0.1175410199 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
16 Hb_004813_010 0.1210990824 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000352_110 0.1216232958 - - DNA topoisomerase II, putative [Ricinus communis]
18 Hb_000418_180 0.1236136982 - - conserved hypothetical protein [Ricinus communis]
19 Hb_033080_010 0.1236407965 - - -
20 Hb_000768_030 0.1238079567 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004970_200 Hb_004970_200 Hb_002973_080 Hb_002973_080 Hb_004970_200--Hb_002973_080 Hb_002659_140 Hb_002659_140 Hb_004970_200--Hb_002659_140 Hb_000107_390 Hb_000107_390 Hb_004970_200--Hb_000107_390 Hb_005333_040 Hb_005333_040 Hb_004970_200--Hb_005333_040 Hb_000538_020 Hb_000538_020 Hb_004970_200--Hb_000538_020 Hb_001001_160 Hb_001001_160 Hb_004970_200--Hb_001001_160 Hb_000025_200 Hb_000025_200 Hb_002973_080--Hb_000025_200 Hb_000352_110 Hb_000352_110 Hb_002973_080--Hb_000352_110 Hb_000001_020 Hb_000001_020 Hb_002973_080--Hb_000001_020 Hb_002973_080--Hb_000107_390 Hb_010638_020 Hb_010638_020 Hb_002973_080--Hb_010638_020 Hb_011224_080 Hb_011224_080 Hb_002659_140--Hb_011224_080 Hb_010174_130 Hb_010174_130 Hb_002659_140--Hb_010174_130 Hb_002659_140--Hb_001001_160 Hb_002659_140--Hb_000025_200 Hb_002111_050 Hb_002111_050 Hb_002659_140--Hb_002111_050 Hb_168918_020 Hb_168918_020 Hb_000107_390--Hb_168918_020 Hb_000107_390--Hb_000538_020 Hb_012340_030 Hb_012340_030 Hb_000107_390--Hb_012340_030 Hb_000017_120 Hb_000017_120 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000107_390--Hb_000001_020 Hb_033080_010 Hb_033080_010 Hb_005333_040--Hb_033080_010 Hb_006501_150 Hb_006501_150 Hb_005333_040--Hb_006501_150 Hb_000270_840 Hb_000270_840 Hb_005333_040--Hb_000270_840 Hb_005333_040--Hb_000538_020 Hb_000329_690 Hb_000329_690 Hb_005333_040--Hb_000329_690 Hb_000666_110 Hb_000666_110 Hb_000538_020--Hb_000666_110 Hb_000538_020--Hb_000270_840 Hb_004722_060 Hb_004722_060 Hb_000538_020--Hb_004722_060 Hb_019962_030 Hb_019962_030 Hb_000538_020--Hb_019962_030 Hb_005527_050 Hb_005527_050 Hb_000538_020--Hb_005527_050 Hb_001001_160--Hb_000025_200 Hb_001001_160--Hb_010174_130 Hb_000733_060 Hb_000733_060 Hb_001001_160--Hb_000733_060 Hb_001001_160--Hb_000771_110 Hb_001001_160--Hb_000001_020 Hb_002377_040 Hb_002377_040 Hb_001001_160--Hb_002377_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.6005 4.00302 20.3851 7.14277 75.0333 41.2912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.671 36.4684 40.993 6.69045 7.74178

CAGE analysis