Hb_004974_010

Information

Type -
Description -
Location Contig4974: 17997-19987
Sequence    

Annotation

kegg
ID pmum:103319180
description F-box/kelch-repeat protein At3g23880-like
nr
ID XP_008218924.1
description PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
swissprot
ID Q9LPW2
description Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=3 SV=2
trembl
ID F6I459
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0041g01840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45570: 18068-19102 , PASA_asmbl_45571: 19124-19330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004974_010 0.0 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
2 Hb_001621_130 0.0837734268 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
3 Hb_006478_060 0.0861429431 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
4 Hb_010053_030 0.0918230876 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
5 Hb_000181_250 0.0928309653 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
6 Hb_000505_020 0.0935019253 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
7 Hb_001366_210 0.0938315368 - - cathepsin B, putative [Ricinus communis]
8 Hb_005143_030 0.0956562131 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
9 Hb_001221_150 0.10029342 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
10 Hb_003747_010 0.1010679199 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
11 Hb_001675_070 0.1020939965 - - eukaryotic translation elongation factor, putative [Ricinus communis]
12 Hb_080313_010 0.1067328134 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
13 Hb_001235_140 0.107627683 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
14 Hb_001140_350 0.1077320804 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
15 Hb_008177_030 0.1086795717 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_001492_010 0.108727526 - - PREDICTED: diacylglycerol kinase 3-like isoform X2 [Populus euphratica]
17 Hb_000109_100 0.1092942857 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
18 Hb_000343_030 0.1097001257 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
19 Hb_005731_090 0.1116040414 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
20 Hb_008143_070 0.1127363414 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]

Gene co-expression network

sample Hb_004974_010 Hb_004974_010 Hb_001621_130 Hb_001621_130 Hb_004974_010--Hb_001621_130 Hb_006478_060 Hb_006478_060 Hb_004974_010--Hb_006478_060 Hb_010053_030 Hb_010053_030 Hb_004974_010--Hb_010053_030 Hb_000181_250 Hb_000181_250 Hb_004974_010--Hb_000181_250 Hb_000505_020 Hb_000505_020 Hb_004974_010--Hb_000505_020 Hb_001366_210 Hb_001366_210 Hb_004974_010--Hb_001366_210 Hb_001621_130--Hb_010053_030 Hb_000369_130 Hb_000369_130 Hb_001621_130--Hb_000369_130 Hb_001621_130--Hb_006478_060 Hb_000343_030 Hb_000343_030 Hb_001621_130--Hb_000343_030 Hb_000923_080 Hb_000923_080 Hb_001621_130--Hb_000923_080 Hb_001621_130--Hb_000505_020 Hb_002374_320 Hb_002374_320 Hb_006478_060--Hb_002374_320 Hb_006478_060--Hb_010053_030 Hb_011930_080 Hb_011930_080 Hb_006478_060--Hb_011930_080 Hb_006478_060--Hb_000923_080 Hb_174821_010 Hb_174821_010 Hb_006478_060--Hb_174821_010 Hb_010053_030--Hb_000923_080 Hb_010053_030--Hb_000505_020 Hb_104061_020 Hb_104061_020 Hb_010053_030--Hb_104061_020 Hb_001235_140 Hb_001235_140 Hb_010053_030--Hb_001235_140 Hb_000648_100 Hb_000648_100 Hb_010053_030--Hb_000648_100 Hb_004096_070 Hb_004096_070 Hb_010053_030--Hb_004096_070 Hb_004970_160 Hb_004970_160 Hb_000181_250--Hb_004970_160 Hb_001541_080 Hb_001541_080 Hb_000181_250--Hb_001541_080 Hb_001221_150 Hb_001221_150 Hb_000181_250--Hb_001221_150 Hb_001028_070 Hb_001028_070 Hb_000181_250--Hb_001028_070 Hb_000181_250--Hb_001621_130 Hb_000109_100 Hb_000109_100 Hb_000505_020--Hb_000109_100 Hb_000505_020--Hb_104061_020 Hb_003498_120 Hb_003498_120 Hb_000505_020--Hb_003498_120 Hb_002078_100 Hb_002078_100 Hb_000505_020--Hb_002078_100 Hb_000505_020--Hb_001235_140 Hb_005731_090 Hb_005731_090 Hb_001366_210--Hb_005731_090 Hb_030627_060 Hb_030627_060 Hb_001366_210--Hb_030627_060 Hb_007635_030 Hb_007635_030 Hb_001366_210--Hb_007635_030 Hb_000375_130 Hb_000375_130 Hb_001366_210--Hb_000375_130 Hb_001454_280 Hb_001454_280 Hb_001366_210--Hb_001454_280 Hb_002174_020 Hb_002174_020 Hb_001366_210--Hb_002174_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6354 23.4103 9.69248 21.1795 39.2853 27.6143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0779 7.93612 8.53506 33.888 10.0661

CAGE analysis