Hb_004976_010

Information

Type -
Description -
Location Contig4976: 8128-12995
Sequence    

Annotation

kegg
ID rcu:RCOM_1429110
description hypothetical protein
nr
ID XP_002512276.1
description hypothetical protein RCOM_1429110 [Ricinus communis]
swissprot
ID Q9LJF5
description Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=2 SV=1
trembl
ID B9REV7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1429110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45572: 8170-13125 , PASA_asmbl_45573: 10989-11557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004976_010 0.0 - - hypothetical protein RCOM_1429110 [Ricinus communis]
2 Hb_012565_050 0.0409038379 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
3 Hb_055235_020 0.0529993692 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
4 Hb_001430_080 0.0548707188 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
5 Hb_007044_110 0.0564271874 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_001673_050 0.0572202969 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
7 Hb_001636_050 0.0618438733 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
8 Hb_001231_090 0.0624790327 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
9 Hb_140049_040 0.0635118215 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
10 Hb_000645_170 0.0637419216 - - conserved hypothetical protein [Ricinus communis]
11 Hb_029977_040 0.0638889677 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
12 Hb_012305_030 0.0650900704 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
13 Hb_000836_410 0.0654407293 - - sec10, putative [Ricinus communis]
14 Hb_002849_170 0.0659502544 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
15 Hb_000340_030 0.0661880703 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
16 Hb_001534_210 0.0666878535 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
17 Hb_000243_210 0.0668003364 - - protein with unknown function [Ricinus communis]
18 Hb_000099_040 0.0675253701 - - unnamed protein product [Coffea canephora]
19 Hb_000710_040 0.0678391108 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
20 Hb_002542_130 0.0689320466 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]

Gene co-expression network

sample Hb_004976_010 Hb_004976_010 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_055235_020 Hb_055235_020 Hb_004976_010--Hb_055235_020 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_007044_110 Hb_007044_110 Hb_004976_010--Hb_007044_110 Hb_001673_050 Hb_001673_050 Hb_004976_010--Hb_001673_050 Hb_001636_050 Hb_001636_050 Hb_004976_010--Hb_001636_050 Hb_000340_030 Hb_000340_030 Hb_012565_050--Hb_000340_030 Hb_000809_160 Hb_000809_160 Hb_012565_050--Hb_000809_160 Hb_002542_130 Hb_002542_130 Hb_012565_050--Hb_002542_130 Hb_002701_150 Hb_002701_150 Hb_012565_050--Hb_002701_150 Hb_004032_230 Hb_004032_230 Hb_012565_050--Hb_004032_230 Hb_000318_120 Hb_000318_120 Hb_055235_020--Hb_000318_120 Hb_011972_020 Hb_011972_020 Hb_055235_020--Hb_011972_020 Hb_055235_020--Hb_007044_110 Hb_055235_020--Hb_001636_050 Hb_000457_230 Hb_000457_230 Hb_055235_020--Hb_000457_230 Hb_000011_100 Hb_000011_100 Hb_001430_080--Hb_000011_100 Hb_001277_020 Hb_001277_020 Hb_001430_080--Hb_001277_020 Hb_000645_170 Hb_000645_170 Hb_001430_080--Hb_000645_170 Hb_003835_070 Hb_003835_070 Hb_001430_080--Hb_003835_070 Hb_000879_040 Hb_000879_040 Hb_001430_080--Hb_000879_040 Hb_000205_260 Hb_000205_260 Hb_007044_110--Hb_000205_260 Hb_007044_110--Hb_000457_230 Hb_005523_020 Hb_005523_020 Hb_007044_110--Hb_005523_020 Hb_007044_110--Hb_001636_050 Hb_002849_170 Hb_002849_170 Hb_001673_050--Hb_002849_170 Hb_000099_040 Hb_000099_040 Hb_001673_050--Hb_000099_040 Hb_001668_010 Hb_001668_010 Hb_001673_050--Hb_001668_010 Hb_007426_060 Hb_007426_060 Hb_001673_050--Hb_007426_060 Hb_004429_010 Hb_004429_010 Hb_001673_050--Hb_004429_010 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_001636_050--Hb_000645_170 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.26905 12.4438 9.61365 6.80121 9.03287 6.99413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21779 5.81976 3.58795 7.69557 8.48884

CAGE analysis