Hb_004976_020

Information

Type -
Description -
Location Contig4976: 13477-16645
Sequence    

Annotation

kegg
ID rcu:RCOM_1429120
description nucleolar protein nop56, putative
nr
ID XP_012089180.1
description PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
swissprot
ID Q9MAB3
description Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1
trembl
ID A0A067JL84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23436 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45572: 8170-13125 , PASA_asmbl_45575: 16048-16650
cDNA
(Sanger)
(ID:Location)		 032_G19.ab1: 16048-16650 , 044_C24.ab1: 16048-16650 , 051_B21.ab1: 16048-16650

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004976_020 0.0 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
2 Hb_021422_010 0.08199813 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
3 Hb_003849_060 0.082409267 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
4 Hb_000808_250 0.082858012 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
5 Hb_000359_330 0.0833640179 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000334_270 0.0858949327 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_006623_020 0.0898100881 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
8 Hb_002045_150 0.091083941 - - histone acetyltransferase gcn5, putative [Ricinus communis]
9 Hb_004450_060 0.0911342451 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
10 Hb_002374_280 0.0911680694 - - -
11 Hb_000649_070 0.0957664016 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
12 Hb_002157_260 0.0961565705 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
13 Hb_001541_260 0.0963016931 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
14 Hb_178968_100 0.0964487901 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
15 Hb_003142_070 0.0971652159 - - hypothetical protein F383_14657 [Gossypium arboreum]
16 Hb_000487_420 0.0980613039 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
17 Hb_003467_010 0.1000014845 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
18 Hb_003849_250 0.1001401618 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
19 Hb_001828_160 0.1012617492 - - hypothetical protein F775_31105 [Aegilops tauschii]
20 Hb_002687_140 0.1025978588 - - hypothetical protein JCGZ_24463 [Jatropha curcas]

Gene co-expression network

sample Hb_004976_020 Hb_004976_020 Hb_021422_010 Hb_021422_010 Hb_004976_020--Hb_021422_010 Hb_003849_060 Hb_003849_060 Hb_004976_020--Hb_003849_060 Hb_000808_250 Hb_000808_250 Hb_004976_020--Hb_000808_250 Hb_000359_330 Hb_000359_330 Hb_004976_020--Hb_000359_330 Hb_000334_270 Hb_000334_270 Hb_004976_020--Hb_000334_270 Hb_006623_020 Hb_006623_020 Hb_004976_020--Hb_006623_020 Hb_021422_010--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_021422_010--Hb_003018_060 Hb_000032_490 Hb_000032_490 Hb_021422_010--Hb_000032_490 Hb_001828_160 Hb_001828_160 Hb_021422_010--Hb_001828_160 Hb_021422_010--Hb_000808_250 Hb_006960_050 Hb_006960_050 Hb_021422_010--Hb_006960_050 Hb_003849_060--Hb_000808_250 Hb_003849_060--Hb_000334_270 Hb_003467_010 Hb_003467_010 Hb_003849_060--Hb_003467_010 Hb_011848_010 Hb_011848_010 Hb_003849_060--Hb_011848_010 Hb_000394_190 Hb_000394_190 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080 Hb_000808_250--Hb_006623_020 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_000359_330--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000359_330--Hb_003091_010 Hb_000359_330--Hb_000394_190 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_010068_040 Hb_010068_040 Hb_000334_270--Hb_010068_040 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_002175_030 Hb_002175_030 Hb_000334_270--Hb_002175_030 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_006623_020--Hb_003018_060 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_006623_020--Hb_003091_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22411 2.52402 2.14747 0.926608 4.71694 2.81128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73999 3.03142 0.887907 1.46408 1.23664

CAGE analysis