Hb_004976_030

Information

Type -
Description -
Location Contig4976: 19322-23846
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04700g
description hypothetical protein
nr
ID XP_006382713.1
description hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID U5GAR2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s04700g PE=4 SV=1
Gene Ontology
ID GO:0004693
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45576: 18861-18973 , PASA_asmbl_45577: 20125-23842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004976_030 0.0 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
2 Hb_000207_250 0.0656448297 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
3 Hb_000200_050 0.0716401849 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_154648_010 0.0750706278 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
5 Hb_000000_250 0.077352624 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
6 Hb_003996_020 0.0781996376 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_004109_190 0.0796400016 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
8 Hb_189003_080 0.0836776939 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
9 Hb_000510_320 0.0846190763 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
10 Hb_183086_060 0.0862201349 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
11 Hb_003195_060 0.0869224491 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
12 Hb_006922_110 0.0874761555 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
13 Hb_006816_140 0.0886342596 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
14 Hb_000700_110 0.0889955498 - - Vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_004109_090 0.0921437717 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_000086_400 0.0938928141 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_000061_420 0.0955366969 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
18 Hb_168000_010 0.0972340446 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
19 Hb_000115_330 0.0973630717 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
20 Hb_009048_040 0.0974934227 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]

Gene co-expression network

sample Hb_004976_030 Hb_004976_030 Hb_000207_250 Hb_000207_250 Hb_004976_030--Hb_000207_250 Hb_000200_050 Hb_000200_050 Hb_004976_030--Hb_000200_050 Hb_154648_010 Hb_154648_010 Hb_004976_030--Hb_154648_010 Hb_000000_250 Hb_000000_250 Hb_004976_030--Hb_000000_250 Hb_003996_020 Hb_003996_020 Hb_004976_030--Hb_003996_020 Hb_004109_190 Hb_004109_190 Hb_004976_030--Hb_004109_190 Hb_000898_040 Hb_000898_040 Hb_000207_250--Hb_000898_040 Hb_001248_130 Hb_001248_130 Hb_000207_250--Hb_001248_130 Hb_189003_080 Hb_189003_080 Hb_000207_250--Hb_189003_080 Hb_000409_020 Hb_000409_020 Hb_000207_250--Hb_000409_020 Hb_000907_080 Hb_000907_080 Hb_000207_250--Hb_000907_080 Hb_006816_140 Hb_006816_140 Hb_000200_050--Hb_006816_140 Hb_001158_140 Hb_001158_140 Hb_000200_050--Hb_001158_140 Hb_016065_010 Hb_016065_010 Hb_000200_050--Hb_016065_010 Hb_000200_050--Hb_003996_020 Hb_002835_410 Hb_002835_410 Hb_000200_050--Hb_002835_410 Hb_154648_010--Hb_000000_250 Hb_006922_110 Hb_006922_110 Hb_154648_010--Hb_006922_110 Hb_154648_010--Hb_003996_020 Hb_003018_190 Hb_003018_190 Hb_154648_010--Hb_003018_190 Hb_154648_010--Hb_006816_140 Hb_000086_400 Hb_000086_400 Hb_000000_250--Hb_000086_400 Hb_000000_250--Hb_006922_110 Hb_001898_220 Hb_001898_220 Hb_000000_250--Hb_001898_220 Hb_000000_250--Hb_189003_080 Hb_000000_250--Hb_003996_020 Hb_002759_060 Hb_002759_060 Hb_003996_020--Hb_002759_060 Hb_003996_020--Hb_006922_110 Hb_061090_010 Hb_061090_010 Hb_003996_020--Hb_061090_010 Hb_001242_110 Hb_001242_110 Hb_003996_020--Hb_001242_110 Hb_033834_040 Hb_033834_040 Hb_003996_020--Hb_033834_040 Hb_183086_060 Hb_183086_060 Hb_004109_190--Hb_183086_060 Hb_002687_110 Hb_002687_110 Hb_004109_190--Hb_002687_110 Hb_004724_420 Hb_004724_420 Hb_004109_190--Hb_004724_420 Hb_006541_030 Hb_006541_030 Hb_004109_190--Hb_006541_030 Hb_000567_260 Hb_000567_260 Hb_004109_190--Hb_000567_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3225 12.9543 7.48293 16.7469 30.2001 42.5632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.7135 34.7236 45.0303 14.4577 10.5087

CAGE analysis