Hb_004976_050

Information

Type -
Description -
Location Contig4976: 41553-42019
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45579: 41774-42064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004976_050 0.0 - - -
2 Hb_000011_290 0.1998820082 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
3 Hb_138710_010 0.2007284629 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
4 Hb_094437_060 0.2042373238 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
5 Hb_002849_090 0.2074188097 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
6 Hb_000879_190 0.2140540559 - - conserved hypothetical protein [Ricinus communis]
7 Hb_158092_060 0.2146720286 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
8 Hb_001691_030 0.21875361 - - lipoxygenase, putative [Ricinus communis]
9 Hb_001390_030 0.2203258418 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
10 Hb_007943_160 0.2210949328 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
11 Hb_006275_010 0.2218172939 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
12 Hb_001206_090 0.2267608491 - - pyruvate decarboxylase [Hevea brasiliensis]
13 Hb_003073_180 0.2315925653 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
14 Hb_002057_010 0.2320506707 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_001355_130 0.2328630223 - - PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
16 Hb_000157_130 0.2353674874 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X2 [Populus euphratica]
17 Hb_000120_720 0.2355989562 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
18 Hb_183623_010 0.2361244922 - - aldo-keto reductase, putative [Ricinus communis]
19 Hb_006141_030 0.2388379117 - - -
20 Hb_001699_200 0.242974929 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004976_050 Hb_004976_050 Hb_000011_290 Hb_000011_290 Hb_004976_050--Hb_000011_290 Hb_138710_010 Hb_138710_010 Hb_004976_050--Hb_138710_010 Hb_094437_060 Hb_094437_060 Hb_004976_050--Hb_094437_060 Hb_002849_090 Hb_002849_090 Hb_004976_050--Hb_002849_090 Hb_000879_190 Hb_000879_190 Hb_004976_050--Hb_000879_190 Hb_158092_060 Hb_158092_060 Hb_004976_050--Hb_158092_060 Hb_001699_200 Hb_001699_200 Hb_000011_290--Hb_001699_200 Hb_007943_160 Hb_007943_160 Hb_000011_290--Hb_007943_160 Hb_004079_080 Hb_004079_080 Hb_000011_290--Hb_004079_080 Hb_001971_060 Hb_001971_060 Hb_000011_290--Hb_001971_060 Hb_000061_090 Hb_000061_090 Hb_000011_290--Hb_000061_090 Hb_002539_020 Hb_002539_020 Hb_000011_290--Hb_002539_020 Hb_001390_030 Hb_001390_030 Hb_138710_010--Hb_001390_030 Hb_138710_010--Hb_094437_060 Hb_138710_010--Hb_004079_080 Hb_001332_040 Hb_001332_040 Hb_138710_010--Hb_001332_040 Hb_000805_320 Hb_000805_320 Hb_138710_010--Hb_000805_320 Hb_003226_120 Hb_003226_120 Hb_138710_010--Hb_003226_120 Hb_094437_060--Hb_000805_320 Hb_001355_130 Hb_001355_130 Hb_094437_060--Hb_001355_130 Hb_005873_010 Hb_005873_010 Hb_094437_060--Hb_005873_010 Hb_007432_020 Hb_007432_020 Hb_094437_060--Hb_007432_020 Hb_105602_010 Hb_105602_010 Hb_094437_060--Hb_105602_010 Hb_000085_290 Hb_000085_290 Hb_002849_090--Hb_000085_290 Hb_001579_290 Hb_001579_290 Hb_002849_090--Hb_001579_290 Hb_001691_030 Hb_001691_030 Hb_002849_090--Hb_001691_030 Hb_001414_020 Hb_001414_020 Hb_002849_090--Hb_001414_020 Hb_177321_040 Hb_177321_040 Hb_002849_090--Hb_177321_040 Hb_002603_030 Hb_002603_030 Hb_002849_090--Hb_002603_030 Hb_000165_210 Hb_000165_210 Hb_000879_190--Hb_000165_210 Hb_000879_190--Hb_000061_090 Hb_000414_110 Hb_000414_110 Hb_000879_190--Hb_000414_110 Hb_004800_170 Hb_004800_170 Hb_000879_190--Hb_004800_170 Hb_000879_190--Hb_158092_060 Hb_000879_190--Hb_001699_200 Hb_001004_100 Hb_001004_100 Hb_158092_060--Hb_001004_100 Hb_000675_060 Hb_000675_060 Hb_158092_060--Hb_000675_060 Hb_000471_080 Hb_000471_080 Hb_158092_060--Hb_000471_080 Hb_000922_010 Hb_000922_010 Hb_158092_060--Hb_000922_010 Hb_009545_010 Hb_009545_010 Hb_158092_060--Hb_009545_010 Hb_002471_260 Hb_002471_260 Hb_158092_060--Hb_002471_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2008 11.3644 50.8291 28.1649 11.0924 7.6735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0341 36.9571 40.1641 308.16 7.34257

CAGE analysis