Hb_004976_060

Information

Type -
Description -
Location Contig4976: 43508-44170
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45580: 43252-44417
cDNA
(Sanger)
(ID:Location)		 009_J20.ab1: 43510-44162 , 022_J21.ab1: 43510-44171 , 035_M08.ab1: 43510-44106 , 038_H01.ab1: 43584-44162 , 043_G16.ab1: 43295-44171

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004976_060 0.0 - - -
2 Hb_000538_190 0.1392943476 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
3 Hb_003525_020 0.1685741097 - - conserved hypothetical protein [Ricinus communis]
4 Hb_020178_060 0.1916924214 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
5 Hb_004976_040 0.1920222553 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
6 Hb_002903_130 0.1956667783 - - epoxide hydrolase, putative [Ricinus communis]
7 Hb_048848_010 0.2049516805 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
8 Hb_001269_040 0.2066016938 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_001369_770 0.2067457142 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
10 Hb_020178_050 0.2076615405 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
11 Hb_001338_050 0.2108281238 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
12 Hb_010261_010 0.2125534571 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
13 Hb_089920_010 0.2154883463 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_003371_120 0.215498049 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
15 Hb_007259_020 0.2204297001 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
16 Hb_000787_190 0.2205041105 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
17 Hb_004724_130 0.2236241281 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
18 Hb_006615_040 0.2244581062 - - monoxygenase, putative [Ricinus communis]
19 Hb_002273_080 0.2254063612 - - geranylgeranyl reductase [Monoraphidium neglectum]
20 Hb_011791_020 0.2266865087 - - hypothetical protein Csa_6G486930 [Cucumis sativus]

Gene co-expression network

sample Hb_004976_060 Hb_004976_060 Hb_000538_190 Hb_000538_190 Hb_004976_060--Hb_000538_190 Hb_003525_020 Hb_003525_020 Hb_004976_060--Hb_003525_020 Hb_020178_060 Hb_020178_060 Hb_004976_060--Hb_020178_060 Hb_004976_040 Hb_004976_040 Hb_004976_060--Hb_004976_040 Hb_002903_130 Hb_002903_130 Hb_004976_060--Hb_002903_130 Hb_048848_010 Hb_048848_010 Hb_004976_060--Hb_048848_010 Hb_001369_770 Hb_001369_770 Hb_000538_190--Hb_001369_770 Hb_020178_050 Hb_020178_050 Hb_000538_190--Hb_020178_050 Hb_000538_190--Hb_003525_020 Hb_002942_110 Hb_002942_110 Hb_000538_190--Hb_002942_110 Hb_089100_040 Hb_089100_040 Hb_000538_190--Hb_089100_040 Hb_003525_020--Hb_048848_010 Hb_003525_020--Hb_001369_770 Hb_001584_010 Hb_001584_010 Hb_003525_020--Hb_001584_010 Hb_010261_010 Hb_010261_010 Hb_003525_020--Hb_010261_010 Hb_000362_090 Hb_000362_090 Hb_003525_020--Hb_000362_090 Hb_020178_060--Hb_002903_130 Hb_000283_150 Hb_000283_150 Hb_020178_060--Hb_000283_150 Hb_008948_160 Hb_008948_160 Hb_020178_060--Hb_008948_160 Hb_012565_080 Hb_012565_080 Hb_020178_060--Hb_012565_080 Hb_020178_060--Hb_000538_190 Hb_000521_170 Hb_000521_170 Hb_020178_060--Hb_000521_170 Hb_000645_240 Hb_000645_240 Hb_004976_040--Hb_000645_240 Hb_008226_100 Hb_008226_100 Hb_004976_040--Hb_008226_100 Hb_000010_350 Hb_000010_350 Hb_004976_040--Hb_000010_350 Hb_000866_090 Hb_000866_090 Hb_004976_040--Hb_000866_090 Hb_004126_080 Hb_004126_080 Hb_004976_040--Hb_004126_080 Hb_004976_040--Hb_089100_040 Hb_000977_010 Hb_000977_010 Hb_002903_130--Hb_000977_010 Hb_001946_150 Hb_001946_150 Hb_002903_130--Hb_001946_150 Hb_003640_030 Hb_003640_030 Hb_002903_130--Hb_003640_030 Hb_000097_040 Hb_000097_040 Hb_002903_130--Hb_000097_040 Hb_000362_110 Hb_000362_110 Hb_002903_130--Hb_000362_110 Hb_048848_010--Hb_000362_090 Hb_001091_030 Hb_001091_030 Hb_048848_010--Hb_001091_030 Hb_010398_010 Hb_010398_010 Hb_048848_010--Hb_010398_010 Hb_048848_010--Hb_000538_190 Hb_001351_040 Hb_001351_040 Hb_048848_010--Hb_001351_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.101 1132.48 201.93 56.4087 253.309 292.667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1763 36.3204 23.0435 521.559 49.437

CAGE analysis