Hb_004976_070

Information

Type -
Description -
Location Contig4976: 44963-57018
Sequence    

Annotation

kegg
ID rcu:RCOM_1429150
description eukaryotic translation initiation factor 2b, epsilon subunit, putative
nr
ID XP_002512280.1
description eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REW1
description Eukaryotic translation initiation factor 2b, epsilon subunit, putative OS=Ricinus communis GN=RCOM_1429150 PE=4 SV=1
Gene Ontology
ID GO:0003743
description trimeric -like enzyme isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004976_070 0.0 - - eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis]
2 Hb_002805_220 0.1321965971 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
3 Hb_000676_140 0.1395839472 - - structural constituent of ribosome, putative [Ricinus communis]
4 Hb_002170_040 0.1490187617 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000847_060 0.1496135298 - - hypothetical protein [Jatropha curcas]
6 Hb_000167_060 0.1512771699 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Jatropha curcas]
7 Hb_000028_100 0.1517383887 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
8 Hb_000327_230 0.15292223 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
9 Hb_062226_140 0.1530080547 - - PREDICTED: protein NEDD1 [Jatropha curcas]
10 Hb_000184_100 0.1543081016 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
11 Hb_000739_300 0.1548804592 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
12 Hb_006573_020 0.1559476507 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
13 Hb_001168_020 0.1566482437 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
14 Hb_000136_260 0.1570761758 - - 40S ribosomal protein S5A [Hevea brasiliensis]
15 Hb_020581_010 0.1601550532 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_004709_010 0.1616536625 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
17 Hb_001863_430 0.1629074039 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
18 Hb_000155_160 0.1631806239 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
19 Hb_000120_540 0.1631965659 - - translation initiation factor, putative [Ricinus communis]
20 Hb_000111_380 0.163608132 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]

Gene co-expression network

sample Hb_004976_070 Hb_004976_070 Hb_002805_220 Hb_002805_220 Hb_004976_070--Hb_002805_220 Hb_000676_140 Hb_000676_140 Hb_004976_070--Hb_000676_140 Hb_002170_040 Hb_002170_040 Hb_004976_070--Hb_002170_040 Hb_000847_060 Hb_000847_060 Hb_004976_070--Hb_000847_060 Hb_000167_060 Hb_000167_060 Hb_004976_070--Hb_000167_060 Hb_000028_100 Hb_000028_100 Hb_004976_070--Hb_000028_100 Hb_008695_040 Hb_008695_040 Hb_002805_220--Hb_008695_040 Hb_005736_060 Hb_005736_060 Hb_002805_220--Hb_005736_060 Hb_000342_100 Hb_000342_100 Hb_002805_220--Hb_000342_100 Hb_000207_400 Hb_000207_400 Hb_002805_220--Hb_000207_400 Hb_008695_050 Hb_008695_050 Hb_002805_220--Hb_008695_050 Hb_062226_140 Hb_062226_140 Hb_002805_220--Hb_062226_140 Hb_000011_570 Hb_000011_570 Hb_000676_140--Hb_000011_570 Hb_004709_010 Hb_004709_010 Hb_000676_140--Hb_004709_010 Hb_000866_240 Hb_000866_240 Hb_000676_140--Hb_000866_240 Hb_014720_040 Hb_014720_040 Hb_000676_140--Hb_014720_040 Hb_001016_150 Hb_001016_150 Hb_000676_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_000676_140--Hb_001863_430 Hb_002585_040 Hb_002585_040 Hb_002170_040--Hb_002585_040 Hb_000530_010 Hb_000530_010 Hb_002170_040--Hb_000530_010 Hb_038172_010 Hb_038172_010 Hb_002170_040--Hb_038172_010 Hb_000175_100 Hb_000175_100 Hb_002170_040--Hb_000175_100 Hb_022181_030 Hb_022181_030 Hb_002170_040--Hb_022181_030 Hb_007451_010 Hb_007451_010 Hb_002170_040--Hb_007451_010 Hb_001728_040 Hb_001728_040 Hb_000847_060--Hb_001728_040 Hb_000155_160 Hb_000155_160 Hb_000847_060--Hb_000155_160 Hb_002239_050 Hb_002239_050 Hb_000847_060--Hb_002239_050 Hb_000419_020 Hb_000419_020 Hb_000847_060--Hb_000419_020 Hb_007894_060 Hb_007894_060 Hb_000847_060--Hb_007894_060 Hb_000161_130 Hb_000161_130 Hb_000847_060--Hb_000161_130 Hb_003943_130 Hb_003943_130 Hb_000167_060--Hb_003943_130 Hb_005667_040 Hb_005667_040 Hb_000167_060--Hb_005667_040 Hb_020581_010 Hb_020581_010 Hb_000167_060--Hb_020581_010 Hb_004223_220 Hb_004223_220 Hb_000167_060--Hb_004223_220 Hb_019249_010 Hb_019249_010 Hb_000167_060--Hb_019249_010 Hb_002289_120 Hb_002289_120 Hb_000167_060--Hb_002289_120 Hb_003929_150 Hb_003929_150 Hb_000028_100--Hb_003929_150 Hb_000028_100--Hb_000155_160 Hb_002235_080 Hb_002235_080 Hb_000028_100--Hb_002235_080 Hb_003494_050 Hb_003494_050 Hb_000028_100--Hb_003494_050 Hb_000028_100--Hb_000419_020 Hb_000441_110 Hb_000441_110 Hb_000028_100--Hb_000441_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0968186 0.298329 0.149087 0.412386 0.159979 0.444209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.371982 0.818883 0.105061 0.332341 0.233033

CAGE analysis