Hb_004979_080

Information

Type -
Description -
Location Contig4979: 73892-76830
Sequence    

Annotation

kegg
ID rcu:RCOM_0574920
description kinase, putative (EC:2.7.10.1)
nr
ID XP_002529764.1
description kinase, putative [Ricinus communis]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID B9SUU5
description Kinase, putative OS=Ricinus communis GN=RCOM_0574920 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45593: 54297-76706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004979_080 0.0 - - kinase, putative [Ricinus communis]
2 Hb_096224_050 0.0644435594 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
3 Hb_000644_010 0.0732765834 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
4 Hb_004979_070 0.0753218105 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
5 Hb_033363_030 0.075932204 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
6 Hb_007904_110 0.0769514918 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
7 Hb_000668_180 0.0853619746 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
8 Hb_004291_050 0.0854569129 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
9 Hb_000027_110 0.092820048 - - wall-associated kinase, putative [Ricinus communis]
10 Hb_003643_080 0.0953101028 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
11 Hb_004117_320 0.0975939377 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
12 Hb_000373_010 0.0988694625 - - ATP binding protein, putative [Ricinus communis]
13 Hb_002226_090 0.0993642784 - - Stachyose synthase precursor, putative [Ricinus communis]
14 Hb_011028_030 0.1008618729 - - conserved hypothetical protein [Ricinus communis]
15 Hb_022693_080 0.1042572769 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
16 Hb_010402_040 0.1044400269 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
17 Hb_003125_090 0.1084332531 - - -
18 Hb_066293_010 0.1107186993 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
19 Hb_027337_130 0.1111793076 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
20 Hb_119600_030 0.1119464319 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]

Gene co-expression network

sample Hb_004979_080 Hb_004979_080 Hb_096224_050 Hb_096224_050 Hb_004979_080--Hb_096224_050 Hb_000644_010 Hb_000644_010 Hb_004979_080--Hb_000644_010 Hb_004979_070 Hb_004979_070 Hb_004979_080--Hb_004979_070 Hb_033363_030 Hb_033363_030 Hb_004979_080--Hb_033363_030 Hb_007904_110 Hb_007904_110 Hb_004979_080--Hb_007904_110 Hb_000668_180 Hb_000668_180 Hb_004979_080--Hb_000668_180 Hb_096224_050--Hb_007904_110 Hb_096224_050--Hb_004979_070 Hb_096224_050--Hb_000644_010 Hb_000027_110 Hb_000027_110 Hb_096224_050--Hb_000027_110 Hb_096224_050--Hb_033363_030 Hb_003643_080 Hb_003643_080 Hb_000644_010--Hb_003643_080 Hb_000373_010 Hb_000373_010 Hb_000644_010--Hb_000373_010 Hb_000644_010--Hb_000027_110 Hb_002155_020 Hb_002155_020 Hb_000644_010--Hb_002155_020 Hb_004979_070--Hb_007904_110 Hb_025557_060 Hb_025557_060 Hb_004979_070--Hb_025557_060 Hb_119600_030 Hb_119600_030 Hb_004979_070--Hb_119600_030 Hb_004291_050 Hb_004291_050 Hb_004979_070--Hb_004291_050 Hb_033363_030--Hb_000027_110 Hb_033363_030--Hb_000668_180 Hb_046739_010 Hb_046739_010 Hb_033363_030--Hb_046739_010 Hb_011028_030 Hb_011028_030 Hb_033363_030--Hb_011028_030 Hb_005305_070 Hb_005305_070 Hb_007904_110--Hb_005305_070 Hb_007904_110--Hb_119600_030 Hb_007904_110--Hb_025557_060 Hb_000668_180--Hb_000027_110 Hb_000951_070 Hb_000951_070 Hb_000668_180--Hb_000951_070 Hb_010402_040 Hb_010402_040 Hb_000668_180--Hb_010402_040 Hb_031069_040 Hb_031069_040 Hb_000668_180--Hb_031069_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0262768 14.1621 17.1736 13.7681 0.0246073 0.0115176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.44174 53.1185

CAGE analysis