Hb_004984_020

Information

Type -
Description -
Location Contig4984: 17992-21846
Sequence    

Annotation

kegg
ID rcu:RCOM_0212920
description hypothetical protein
nr
ID XP_012089463.1
description PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LED3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24035 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45598: 17600-20676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004984_020 0.0 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
2 Hb_006834_010 0.08796205 - - conserved hypothetical protein [Ricinus communis]
3 Hb_055440_010 0.1175253502 - - protein binding protein, putative [Ricinus communis]
4 Hb_000853_010 0.1202824804 - - Pectinesterase-3 precursor, putative [Ricinus communis]
5 Hb_002580_020 0.1274047319 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
6 Hb_005144_080 0.127428584 - - Serine carboxypeptidase, putative [Ricinus communis]
7 Hb_001416_170 0.1274947359 - - kinase, putative [Ricinus communis]
8 Hb_027556_060 0.1323156588 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
9 Hb_146901_020 0.1337135749 - - -
10 Hb_004357_030 0.134914346 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
11 Hb_001002_090 0.146815072 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
12 Hb_003189_010 0.1469806251 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
13 Hb_000187_110 0.1478898799 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
14 Hb_000544_130 0.1483394677 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
15 Hb_002025_380 0.1493623059 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
16 Hb_001776_070 0.1495184092 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
17 Hb_000161_230 0.1515315879 - - lactoylglutathione lyase, putative [Ricinus communis]
18 Hb_009615_030 0.1517190185 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000979_080 0.15304227 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
20 Hb_002818_170 0.1545497014 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]

Gene co-expression network

sample Hb_004984_020 Hb_004984_020 Hb_006834_010 Hb_006834_010 Hb_004984_020--Hb_006834_010 Hb_055440_010 Hb_055440_010 Hb_004984_020--Hb_055440_010 Hb_000853_010 Hb_000853_010 Hb_004984_020--Hb_000853_010 Hb_002580_020 Hb_002580_020 Hb_004984_020--Hb_002580_020 Hb_005144_080 Hb_005144_080 Hb_004984_020--Hb_005144_080 Hb_001416_170 Hb_001416_170 Hb_004984_020--Hb_001416_170 Hb_006834_010--Hb_000853_010 Hb_006834_010--Hb_001416_170 Hb_006834_010--Hb_002580_020 Hb_006834_010--Hb_055440_010 Hb_001002_090 Hb_001002_090 Hb_006834_010--Hb_001002_090 Hb_055440_010--Hb_001002_090 Hb_072997_010 Hb_072997_010 Hb_055440_010--Hb_072997_010 Hb_004096_010 Hb_004096_010 Hb_055440_010--Hb_004096_010 Hb_000979_080 Hb_000979_080 Hb_055440_010--Hb_000979_080 Hb_000853_010--Hb_001416_170 Hb_003811_050 Hb_003811_050 Hb_000853_010--Hb_003811_050 Hb_000975_130 Hb_000975_130 Hb_000853_010--Hb_000975_130 Hb_000853_010--Hb_002580_020 Hb_009615_030 Hb_009615_030 Hb_002580_020--Hb_009615_030 Hb_081191_010 Hb_081191_010 Hb_002580_020--Hb_081191_010 Hb_002580_020--Hb_003811_050 Hb_000676_130 Hb_000676_130 Hb_002580_020--Hb_000676_130 Hb_002025_380 Hb_002025_380 Hb_005144_080--Hb_002025_380 Hb_006277_030 Hb_006277_030 Hb_005144_080--Hb_006277_030 Hb_004282_010 Hb_004282_010 Hb_005144_080--Hb_004282_010 Hb_005731_070 Hb_005731_070 Hb_005144_080--Hb_005731_070 Hb_005839_030 Hb_005839_030 Hb_005144_080--Hb_005839_030 Hb_011129_020 Hb_011129_020 Hb_005144_080--Hb_011129_020 Hb_055147_020 Hb_055147_020 Hb_001416_170--Hb_055147_020 Hb_001416_170--Hb_000975_130 Hb_001416_170--Hb_055440_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0386509 1.34872 7.95768 13.2524 0.0918148 0.020646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0347531 0 10.4139 0.644629

CAGE analysis