Hb_004984_030

Information

Type -
Description -
Location Contig4984: 22870-26441
Sequence    

Annotation

kegg
ID rcu:RCOM_0212790
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002531261.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LFT9
description Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2 SV=1
trembl
ID B9SZ42
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0212790 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabh1e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45599: 23413-23618 , PASA_asmbl_45600: 22924-26373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004984_030 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000832_190 0.0592645848 - - Rab3 [Hevea brasiliensis]
3 Hb_002028_090 0.0753759104 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
4 Hb_000926_200 0.0793793733 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
5 Hb_000946_090 0.0838129033 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
6 Hb_040819_010 0.0842332223 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_005460_060 0.0879170787 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
8 Hb_000429_040 0.0927224717 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
9 Hb_032202_100 0.093764716 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
10 Hb_000189_570 0.0941426221 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
11 Hb_002968_040 0.0966457675 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
12 Hb_098315_020 0.0974146827 - - hypothetical protein M569_15712 [Genlisea aurea]
13 Hb_004965_110 0.0992593471 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
14 Hb_001804_080 0.1005453928 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
15 Hb_000365_270 0.1050733221 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
16 Hb_001377_450 0.1057255447 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
17 Hb_015299_030 0.1064241571 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
18 Hb_000035_160 0.1071864387 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
19 Hb_053709_050 0.1073418426 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_002060_010 0.108041353 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004984_030 Hb_004984_030 Hb_000832_190 Hb_000832_190 Hb_004984_030--Hb_000832_190 Hb_002028_090 Hb_002028_090 Hb_004984_030--Hb_002028_090 Hb_000926_200 Hb_000926_200 Hb_004984_030--Hb_000926_200 Hb_000946_090 Hb_000946_090 Hb_004984_030--Hb_000946_090 Hb_040819_010 Hb_040819_010 Hb_004984_030--Hb_040819_010 Hb_005460_060 Hb_005460_060 Hb_004984_030--Hb_005460_060 Hb_000429_040 Hb_000429_040 Hb_000832_190--Hb_000429_040 Hb_004041_020 Hb_004041_020 Hb_000832_190--Hb_004041_020 Hb_000832_190--Hb_000926_200 Hb_004965_110 Hb_004965_110 Hb_000832_190--Hb_004965_110 Hb_000413_240 Hb_000413_240 Hb_000832_190--Hb_000413_240 Hb_002028_090--Hb_040819_010 Hb_001188_030 Hb_001188_030 Hb_002028_090--Hb_001188_030 Hb_044653_040 Hb_044653_040 Hb_002028_090--Hb_044653_040 Hb_002028_090--Hb_000926_200 Hb_002968_040 Hb_002968_040 Hb_002028_090--Hb_002968_040 Hb_000035_160 Hb_000035_160 Hb_000926_200--Hb_000035_160 Hb_000926_200--Hb_040819_010 Hb_032202_100 Hb_032202_100 Hb_000926_200--Hb_032202_100 Hb_053709_050 Hb_053709_050 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_001804_080 Hb_001804_080 Hb_000946_090--Hb_001804_080 Hb_001931_010 Hb_001931_010 Hb_000946_090--Hb_001931_010 Hb_000419_020 Hb_000419_020 Hb_000946_090--Hb_000419_020 Hb_006326_040 Hb_006326_040 Hb_000946_090--Hb_006326_040 Hb_000946_090--Hb_032202_100 Hb_000946_090--Hb_002968_040 Hb_040819_010--Hb_000035_160 Hb_040819_010--Hb_032202_100 Hb_000116_490 Hb_000116_490 Hb_040819_010--Hb_000116_490 Hb_000110_120 Hb_000110_120 Hb_005460_060--Hb_000110_120 Hb_098315_020 Hb_098315_020 Hb_005460_060--Hb_098315_020 Hb_000077_180 Hb_000077_180 Hb_005460_060--Hb_000077_180 Hb_002060_010 Hb_002060_010 Hb_005460_060--Hb_002060_010 Hb_005460_060--Hb_000946_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.81658 7.29172 24.8605 21.6868 4.49929 6.00723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2746 25.1103 11.4723 9.79655 11.2875

CAGE analysis