Hb_004984_090

Information

Type -
Description -
Location Contig4984: 98207-100532
Sequence    

Annotation

kegg
ID pda:103699337
description uncharacterized LOC103699337
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A5AZ10
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041623 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004984_090 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_001623_450 0.0027380978 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
3 Hb_000199_050 0.0029633827 - - Gibberellin 20 oxidase, putative [Ricinus communis]
4 Hb_000789_210 0.0048841686 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
5 Hb_000668_030 0.0066359161 - - -
6 Hb_001115_060 0.007117416 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
7 Hb_002281_060 0.0080293633 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
8 Hb_010523_020 0.0102868423 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_003898_010 0.0108907776 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_001385_020 0.0179731911 - - hypothetical protein POPTR_0001s39010g [Populus trichocarpa]
11 Hb_000288_050 0.0184534405 - - conserved hypothetical protein [Ricinus communis]
12 Hb_133913_010 0.0187575738 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_000051_100 0.0317006588 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
14 Hb_001348_240 0.0330965588 - - Putative polyprotein, identical [Solanum demissum]
15 Hb_002396_010 0.0332552142 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
16 Hb_174010_030 0.0335869086 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
17 Hb_004145_030 0.0337799673 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
18 Hb_006599_040 0.0338427878 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000777_010 0.0343289981 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
20 Hb_000905_010 0.0345942584 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]

Gene co-expression network

sample Hb_004984_090 Hb_004984_090 Hb_001623_450 Hb_001623_450 Hb_004984_090--Hb_001623_450 Hb_000199_050 Hb_000199_050 Hb_004984_090--Hb_000199_050 Hb_000789_210 Hb_000789_210 Hb_004984_090--Hb_000789_210 Hb_000668_030 Hb_000668_030 Hb_004984_090--Hb_000668_030 Hb_001115_060 Hb_001115_060 Hb_004984_090--Hb_001115_060 Hb_002281_060 Hb_002281_060 Hb_004984_090--Hb_002281_060 Hb_001623_450--Hb_000199_050 Hb_001623_450--Hb_000789_210 Hb_001623_450--Hb_000668_030 Hb_001623_450--Hb_001115_060 Hb_001623_450--Hb_002281_060 Hb_000199_050--Hb_000789_210 Hb_000199_050--Hb_000668_030 Hb_000199_050--Hb_001115_060 Hb_000199_050--Hb_002281_060 Hb_000789_210--Hb_000668_030 Hb_000789_210--Hb_001115_060 Hb_000789_210--Hb_002281_060 Hb_010523_020 Hb_010523_020 Hb_000789_210--Hb_010523_020 Hb_003898_010 Hb_003898_010 Hb_000789_210--Hb_003898_010 Hb_000668_030--Hb_001115_060 Hb_000668_030--Hb_002281_060 Hb_000668_030--Hb_010523_020 Hb_000668_030--Hb_003898_010 Hb_001115_060--Hb_002281_060 Hb_001115_060--Hb_010523_020 Hb_001115_060--Hb_003898_010 Hb_002281_060--Hb_010523_020 Hb_002281_060--Hb_003898_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0259314 0.378059

CAGE analysis