Hb_004987_030

Information

Type -
Description -
Location Contig4987: 34029-50938
Sequence    

Annotation

kegg
ID cam:101509306
description enzymatic polyprotein-like
nr
ID XP_012070206.1
description PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID J3SDF5
description Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45603: 17871-78830 , PASA_asmbl_45605: 41259-41568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004987_030 0.0 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
2 Hb_000012_440 0.1355181912 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
3 Hb_000699_080 0.1452707128 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
4 Hb_006925_030 0.1709099116 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
5 Hb_088080_030 0.1769243235 - - ribosomal protein S4 [Hevea brasiliensis]
6 Hb_000120_900 0.1866267725 - - catalase [Hevea brasiliensis]
7 Hb_159305_010 0.1961500125 - - rpl2 [Jatropha curcas]
8 Hb_005656_150 0.1971785849 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
9 Hb_003362_020 0.1989785784 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
10 Hb_002686_060 0.1999989441 - - conserved hypothetical protein [Ricinus communis]
11 Hb_189099_020 0.2005266352 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
12 Hb_000890_110 0.2014224386 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
13 Hb_000159_020 0.2097855564 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
14 Hb_000038_020 0.2120521187 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
15 Hb_168031_020 0.2134690907 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
16 Hb_000710_160 0.2184644218 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_072212_020 0.2200069487 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
18 Hb_005588_110 0.2204619365 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
19 Hb_003032_090 0.2213298315 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
20 Hb_032733_010 0.2236850415 - - hypothetical protein JCGZ_04542 [Jatropha curcas]

Gene co-expression network

sample Hb_004987_030 Hb_004987_030 Hb_000012_440 Hb_000012_440 Hb_004987_030--Hb_000012_440 Hb_000699_080 Hb_000699_080 Hb_004987_030--Hb_000699_080 Hb_006925_030 Hb_006925_030 Hb_004987_030--Hb_006925_030 Hb_088080_030 Hb_088080_030 Hb_004987_030--Hb_088080_030 Hb_000120_900 Hb_000120_900 Hb_004987_030--Hb_000120_900 Hb_159305_010 Hb_159305_010 Hb_004987_030--Hb_159305_010 Hb_005656_150 Hb_005656_150 Hb_000012_440--Hb_005656_150 Hb_000012_440--Hb_000699_080 Hb_000012_440--Hb_006925_030 Hb_000012_440--Hb_088080_030 Hb_003032_090 Hb_003032_090 Hb_000012_440--Hb_003032_090 Hb_002686_060 Hb_002686_060 Hb_000699_080--Hb_002686_060 Hb_000699_080--Hb_006925_030 Hb_003336_020 Hb_003336_020 Hb_000699_080--Hb_003336_020 Hb_000038_020 Hb_000038_020 Hb_000699_080--Hb_000038_020 Hb_000699_080--Hb_000120_900 Hb_168031_020 Hb_168031_020 Hb_000699_080--Hb_168031_020 Hb_000359_070 Hb_000359_070 Hb_006925_030--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_006925_030--Hb_000360_010 Hb_011900_020 Hb_011900_020 Hb_006925_030--Hb_011900_020 Hb_006925_030--Hb_002686_060 Hb_073490_010 Hb_073490_010 Hb_006925_030--Hb_073490_010 Hb_189099_020 Hb_189099_020 Hb_088080_030--Hb_189099_020 Hb_000920_020 Hb_000920_020 Hb_088080_030--Hb_000920_020 Hb_003746_020 Hb_003746_020 Hb_088080_030--Hb_003746_020 Hb_062192_030 Hb_062192_030 Hb_088080_030--Hb_062192_030 Hb_072212_020 Hb_072212_020 Hb_088080_030--Hb_072212_020 Hb_041813_030 Hb_041813_030 Hb_088080_030--Hb_041813_030 Hb_000120_900--Hb_006925_030 Hb_000667_140 Hb_000667_140 Hb_000120_900--Hb_000667_140 Hb_000120_900--Hb_002686_060 Hb_000120_900--Hb_159305_010 Hb_000120_900--Hb_000038_020 Hb_159305_010--Hb_073490_010 Hb_051924_010 Hb_051924_010 Hb_159305_010--Hb_051924_010 Hb_019253_040 Hb_019253_040 Hb_159305_010--Hb_019253_040 Hb_159305_010--Hb_006925_030 Hb_159305_010--Hb_189099_020 Hb_159305_010--Hb_003336_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0532155 0.0832753 0.156438 0.0491934 0.165516 0.202935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0975216 0.153461 0.181528 0.15274 3.2363

CAGE analysis