Hb_004990_010

Information

Type -
Description -
Location Contig4990: 10702-19632
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15830g
description POPTRDRAFT_200054; hypothetical protein
nr
ID XP_012066296.1
description PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
swissprot
ID Q9SRV1
description BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1
trembl
ID A0A067LEH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23857 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45606: 10662-19586
cDNA
(Sanger)
(ID:Location)		 013_B12.ab1: 10683-14442

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004990_010 0.0 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
2 Hb_000260_350 0.0545045369 - - conserved hypothetical protein [Ricinus communis]
3 Hb_093458_040 0.0567262263 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
4 Hb_002989_020 0.0590907394 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
5 Hb_000487_270 0.0626272577 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
6 Hb_013399_020 0.0634043319 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
7 Hb_000948_230 0.0636354324 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_001679_050 0.0642475908 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
9 Hb_168978_010 0.0655909288 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
10 Hb_001473_160 0.0658153434 - - Vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_000116_450 0.0659662167 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
12 Hb_000340_530 0.066010414 - - hypothetical protein VITISV_016664 [Vitis vinifera]
13 Hb_003528_030 0.066114683 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
14 Hb_013575_010 0.0664613738 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
15 Hb_002728_080 0.0667544766 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_013738_020 0.0673856857 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
17 Hb_000574_450 0.0673999526 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
18 Hb_002110_080 0.0676926568 - - FH interacting protein 1 [Theobroma cacao]
19 Hb_000349_260 0.0681348381 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
20 Hb_004627_040 0.069095873 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]

Gene co-expression network

sample Hb_004990_010 Hb_004990_010 Hb_000260_350 Hb_000260_350 Hb_004990_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_004990_010--Hb_093458_040 Hb_002989_020 Hb_002989_020 Hb_004990_010--Hb_002989_020 Hb_000487_270 Hb_000487_270 Hb_004990_010--Hb_000487_270 Hb_013399_020 Hb_013399_020 Hb_004990_010--Hb_013399_020 Hb_000948_230 Hb_000948_230 Hb_004990_010--Hb_000948_230 Hb_001511_060 Hb_001511_060 Hb_000260_350--Hb_001511_060 Hb_000349_260 Hb_000349_260 Hb_000260_350--Hb_000349_260 Hb_000260_350--Hb_093458_040 Hb_005054_110 Hb_005054_110 Hb_000260_350--Hb_005054_110 Hb_168978_010 Hb_168978_010 Hb_000260_350--Hb_168978_010 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_002989_020--Hb_000340_530 Hb_011063_050 Hb_011063_050 Hb_002989_020--Hb_011063_050 Hb_010142_020 Hb_010142_020 Hb_002989_020--Hb_010142_020 Hb_000477_050 Hb_000477_050 Hb_002989_020--Hb_000477_050 Hb_001679_050 Hb_001679_050 Hb_002989_020--Hb_001679_050 Hb_000574_450 Hb_000574_450 Hb_000487_270--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_000487_270--Hb_010515_020 Hb_008279_040 Hb_008279_040 Hb_000487_270--Hb_008279_040 Hb_000208_280 Hb_000208_280 Hb_000487_270--Hb_000208_280 Hb_000487_270--Hb_001679_050 Hb_000170_090 Hb_000170_090 Hb_013399_020--Hb_000170_090 Hb_000923_010 Hb_000923_010 Hb_013399_020--Hb_000923_010 Hb_105328_020 Hb_105328_020 Hb_013399_020--Hb_105328_020 Hb_000441_220 Hb_000441_220 Hb_013399_020--Hb_000441_220 Hb_003683_020 Hb_003683_020 Hb_013399_020--Hb_003683_020 Hb_013399_020--Hb_093458_040 Hb_003994_230 Hb_003994_230 Hb_000948_230--Hb_003994_230 Hb_013575_010 Hb_013575_010 Hb_000948_230--Hb_013575_010 Hb_003057_060 Hb_003057_060 Hb_000948_230--Hb_003057_060 Hb_000720_040 Hb_000720_040 Hb_000948_230--Hb_000720_040 Hb_000948_230--Hb_001511_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.68104 14.599 15.0029 23.8599 13.5771 15.4685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5723 17.2968 14.4633 15.7206 13.6773

CAGE analysis