Hb_004993_050

Information

Type -
Description -
Location Contig4993: 87100-93110
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45612: 90073-90420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004993_050 0.0 - - -
2 Hb_002056_060 0.0721193581 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
3 Hb_016901_010 0.0791731502 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
4 Hb_001158_140 0.0806378215 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
5 Hb_006816_140 0.0853688164 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
6 Hb_005463_040 0.0862470401 - - signal transducer, putative [Ricinus communis]
7 Hb_001699_130 0.0868245751 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
8 Hb_003266_130 0.088001987 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
9 Hb_016065_010 0.0885399788 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
10 Hb_000072_080 0.0890725473 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
11 Hb_012675_060 0.0904591858 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
12 Hb_000696_040 0.0949087932 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_000009_160 0.0949820002 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
14 Hb_005289_030 0.0967677654 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
15 Hb_000120_680 0.0974051134 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
16 Hb_002216_040 0.0976664353 - - PREDICTED: protein PRD1 [Jatropha curcas]
17 Hb_172932_010 0.0978955075 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000200_050 0.0984858959 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_012753_160 0.0985184948 - - ara4-interacting protein, putative [Ricinus communis]
20 Hb_000617_150 0.0989303699 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]

Gene co-expression network

sample Hb_004993_050 Hb_004993_050 Hb_002056_060 Hb_002056_060 Hb_004993_050--Hb_002056_060 Hb_016901_010 Hb_016901_010 Hb_004993_050--Hb_016901_010 Hb_001158_140 Hb_001158_140 Hb_004993_050--Hb_001158_140 Hb_006816_140 Hb_006816_140 Hb_004993_050--Hb_006816_140 Hb_005463_040 Hb_005463_040 Hb_004993_050--Hb_005463_040 Hb_001699_130 Hb_001699_130 Hb_004993_050--Hb_001699_130 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_000125_030 Hb_000125_030 Hb_002056_060--Hb_000125_030 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_000120_680 Hb_000120_680 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010 Hb_001454_190 Hb_001454_190 Hb_016901_010--Hb_001454_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000723_080 Hb_000723_080 Hb_016901_010--Hb_000723_080 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130 Hb_001158_140--Hb_006816_140 Hb_000200_050 Hb_000200_050 Hb_001158_140--Hb_000200_050 Hb_005488_010 Hb_005488_010 Hb_001158_140--Hb_005488_010 Hb_003266_130 Hb_003266_130 Hb_001158_140--Hb_003266_130 Hb_003018_190 Hb_003018_190 Hb_001158_140--Hb_003018_190 Hb_006816_140--Hb_000200_050 Hb_006816_140--Hb_003266_130 Hb_006816_140--Hb_016901_010 Hb_000997_400 Hb_000997_400 Hb_006816_140--Hb_000997_400 Hb_000614_230 Hb_000614_230 Hb_006816_140--Hb_000614_230 Hb_008221_140 Hb_008221_140 Hb_005463_040--Hb_008221_140 Hb_086639_030 Hb_086639_030 Hb_005463_040--Hb_086639_030 Hb_002183_090 Hb_002183_090 Hb_005463_040--Hb_002183_090 Hb_012675_060 Hb_012675_060 Hb_005463_040--Hb_012675_060 Hb_006031_020 Hb_006031_020 Hb_005463_040--Hb_006031_020 Hb_000384_100 Hb_000384_100 Hb_005463_040--Hb_000384_100 Hb_000617_150 Hb_000617_150 Hb_001699_130--Hb_000617_150 Hb_001699_130--Hb_000696_040 Hb_001699_130--Hb_000120_680 Hb_001699_130--Hb_000723_080 Hb_010608_050 Hb_010608_050 Hb_001699_130--Hb_010608_050 Hb_001699_130--Hb_016901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8014 4.86428 1.7569 4.95554 9.21027 7.92985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4972 17.9855 19.1674 7.91789 4.89281

CAGE analysis