Hb_004993_060

Information

Type -
Description -
Location Contig4993: 116050-117202
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45613: 116035-117665 , PASA_asmbl_45614: 116175-117551
cDNA
(Sanger)
(ID:Location)		 010_I05.ab1: 116587-117665

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004993_060 0.0 - - -
2 Hb_031910_020 0.0719339585 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
3 Hb_000549_040 0.0915727372 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
4 Hb_007044_050 0.0927888805 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
5 Hb_000603_080 0.1011537798 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
6 Hb_023771_010 0.1023389475 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
7 Hb_000152_320 0.1045969838 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001504_330 0.1080178698 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
9 Hb_000840_250 0.1087498271 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
10 Hb_003847_030 0.1100157068 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
11 Hb_108329_020 0.1112279659 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
12 Hb_001341_100 0.1121290738 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
13 Hb_001898_080 0.1131391972 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
14 Hb_000367_260 0.1145101511 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
15 Hb_002799_040 0.1162871393 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
16 Hb_010344_050 0.1165438837 - - Adagio 1 -like protein [Gossypium arboreum]
17 Hb_006824_050 0.1172958335 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Jatropha curcas]
18 Hb_000173_470 0.1175259206 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
19 Hb_001352_020 0.1177892643 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
20 Hb_001314_070 0.1184408564 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004993_060 Hb_004993_060 Hb_031910_020 Hb_031910_020 Hb_004993_060--Hb_031910_020 Hb_000549_040 Hb_000549_040 Hb_004993_060--Hb_000549_040 Hb_007044_050 Hb_007044_050 Hb_004993_060--Hb_007044_050 Hb_000603_080 Hb_000603_080 Hb_004993_060--Hb_000603_080 Hb_023771_010 Hb_023771_010 Hb_004993_060--Hb_023771_010 Hb_000152_320 Hb_000152_320 Hb_004993_060--Hb_000152_320 Hb_031910_020--Hb_000603_080 Hb_001314_070 Hb_001314_070 Hb_031910_020--Hb_001314_070 Hb_031910_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_031910_020--Hb_001504_330 Hb_002799_040 Hb_002799_040 Hb_031910_020--Hb_002799_040 Hb_004117_260 Hb_004117_260 Hb_000549_040--Hb_004117_260 Hb_000367_260 Hb_000367_260 Hb_000549_040--Hb_000367_260 Hb_000549_040--Hb_001314_070 Hb_005228_070 Hb_005228_070 Hb_000549_040--Hb_005228_070 Hb_010344_050 Hb_010344_050 Hb_007044_050--Hb_010344_050 Hb_001352_020 Hb_001352_020 Hb_007044_050--Hb_001352_020 Hb_000505_150 Hb_000505_150 Hb_007044_050--Hb_000505_150 Hb_001898_080 Hb_001898_080 Hb_007044_050--Hb_001898_080 Hb_007386_040 Hb_007386_040 Hb_007044_050--Hb_007386_040 Hb_009803_050 Hb_009803_050 Hb_000603_080--Hb_009803_050 Hb_000603_080--Hb_001314_070 Hb_005488_200 Hb_005488_200 Hb_000603_080--Hb_005488_200 Hb_000603_080--Hb_001504_330 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260 Hb_010775_040 Hb_010775_040 Hb_023771_010--Hb_010775_040 Hb_000049_210 Hb_000049_210 Hb_023771_010--Hb_000049_210 Hb_000173_470 Hb_000173_470 Hb_023771_010--Hb_000173_470 Hb_019863_070 Hb_019863_070 Hb_023771_010--Hb_019863_070 Hb_011218_090 Hb_011218_090 Hb_023771_010--Hb_011218_090 Hb_002456_010 Hb_002456_010 Hb_023771_010--Hb_002456_010 Hb_000152_320--Hb_000505_150 Hb_000140_380 Hb_000140_380 Hb_000152_320--Hb_000140_380 Hb_000753_230 Hb_000753_230 Hb_000152_320--Hb_000753_230 Hb_000252_100 Hb_000252_100 Hb_000152_320--Hb_000252_100 Hb_000152_320--Hb_000173_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.42528 12.6309 5.30472 10.3242 4.85466 5.12019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.48124 12.3909 20.6269 14.7319 8.51304

CAGE analysis