Hb_004994_020

Information

Type -
Description -
Location Contig4994: 7608-12453
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa003145mg
description hypothetical protein
nr
ID XP_012083471.1
description PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
swissprot
ID Q93W95
description Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=2 SV=1
trembl
ID A0A067K0W0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14454 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45615: 3049-7086 , PASA_asmbl_45616: 7613-12357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_020 0.0 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
2 Hb_028487_160 0.0688754992 - - clathrin assembly protein, putative [Ricinus communis]
3 Hb_016172_030 0.0784152373 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
4 Hb_012518_070 0.0800022681 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
5 Hb_003086_170 0.0814835472 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
6 Hb_028487_070 0.084938313 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000103_290 0.0865009355 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
8 Hb_011249_070 0.0904763586 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
9 Hb_000409_050 0.0918118045 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
10 Hb_086063_020 0.0920048291 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
11 Hb_023344_150 0.0924925379 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
12 Hb_008289_040 0.0932124094 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
13 Hb_006100_020 0.0943289804 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
14 Hb_024650_080 0.094470543 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
15 Hb_000567_230 0.0953117476 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
16 Hb_001811_170 0.0955437146 - - dynamin, putative [Ricinus communis]
17 Hb_003626_070 0.095628543 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
18 Hb_007472_070 0.0959868751 - - cir, putative [Ricinus communis]
19 Hb_001141_240 0.0960743793 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
20 Hb_000773_040 0.0961760284 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004994_020 Hb_004994_020 Hb_028487_160 Hb_028487_160 Hb_004994_020--Hb_028487_160 Hb_016172_030 Hb_016172_030 Hb_004994_020--Hb_016172_030 Hb_012518_070 Hb_012518_070 Hb_004994_020--Hb_012518_070 Hb_003086_170 Hb_003086_170 Hb_004994_020--Hb_003086_170 Hb_028487_070 Hb_028487_070 Hb_004994_020--Hb_028487_070 Hb_000103_290 Hb_000103_290 Hb_004994_020--Hb_000103_290 Hb_000227_160 Hb_000227_160 Hb_028487_160--Hb_000227_160 Hb_006452_120 Hb_006452_120 Hb_028487_160--Hb_006452_120 Hb_008748_030 Hb_008748_030 Hb_028487_160--Hb_008748_030 Hb_000367_090 Hb_000367_090 Hb_028487_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_028487_160--Hb_008289_040 Hb_060980_010 Hb_060980_010 Hb_016172_030--Hb_060980_010 Hb_021165_010 Hb_021165_010 Hb_016172_030--Hb_021165_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_027506_010 Hb_027506_010 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_001440_020 Hb_001440_020 Hb_012518_070--Hb_001440_020 Hb_012055_040 Hb_012055_040 Hb_012518_070--Hb_012055_040 Hb_000317_100 Hb_000317_100 Hb_012518_070--Hb_000317_100 Hb_012114_100 Hb_012114_100 Hb_012518_070--Hb_012114_100 Hb_005215_010 Hb_005215_010 Hb_012518_070--Hb_005215_010 Hb_000494_050 Hb_000494_050 Hb_012518_070--Hb_000494_050 Hb_000365_400 Hb_000365_400 Hb_003086_170--Hb_000365_400 Hb_003086_170--Hb_012518_070 Hb_010515_020 Hb_010515_020 Hb_003086_170--Hb_010515_020 Hb_001269_600 Hb_001269_600 Hb_003086_170--Hb_001269_600 Hb_000363_040 Hb_000363_040 Hb_003086_170--Hb_000363_040 Hb_000645_280 Hb_000645_280 Hb_028487_070--Hb_000645_280 Hb_002774_190 Hb_002774_190 Hb_028487_070--Hb_002774_190 Hb_000078_140 Hb_000078_140 Hb_028487_070--Hb_000078_140 Hb_000139_080 Hb_000139_080 Hb_028487_070--Hb_000139_080 Hb_000815_300 Hb_000815_300 Hb_028487_070--Hb_000815_300 Hb_001141_240 Hb_001141_240 Hb_028487_070--Hb_001141_240 Hb_048476_080 Hb_048476_080 Hb_000103_290--Hb_048476_080 Hb_000103_290--Hb_016172_030 Hb_000954_010 Hb_000954_010 Hb_000103_290--Hb_000954_010 Hb_000103_290--Hb_060980_010 Hb_000103_290--Hb_027506_010 Hb_000103_290--Hb_024650_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.99193 10.2068 9.14866 17.8576 7.73738 5.15841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.06573 8.77809 5.56523 10.9172 13.2656

CAGE analysis