Hb_004994_050

Information

Type -
Description -
Location Contig4994: 34646-38354
Sequence    

Annotation

kegg
ID rcu:RCOM_1614270
description cleavage and polyadenylation specificity factor, putative
nr
ID XP_012083465.1
description PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID B9RDL6
description Cleavage and polyadenylation specificity factor, putative OS=Ricinus communis GN=RCOM_1614270 PE=4 SV=1
Gene Ontology
ID GO:0005774
description e3 ubiquitin-protein ligase at1g63170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45620: 34624-38345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_050 0.0 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
2 Hb_004531_140 0.0944874851 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
3 Hb_007919_100 0.100999392 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
4 Hb_000579_120 0.1015589154 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
5 Hb_002947_030 0.1022820109 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
6 Hb_002073_190 0.1028688276 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
7 Hb_132840_110 0.1033968911 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
8 Hb_000107_210 0.1041817861 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
9 Hb_000022_020 0.107284473 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
10 Hb_004218_280 0.1079739714 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
11 Hb_006658_020 0.1086610031 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
12 Hb_069662_010 0.1109164174 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
13 Hb_000023_260 0.1118352666 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
14 Hb_003462_070 0.1124713172 - - arsenical pump-driving atpase, putative [Ricinus communis]
15 Hb_001898_210 0.1127089573 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
16 Hb_002400_320 0.1127150687 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003688_090 0.1131821053 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
18 Hb_000959_030 0.1133606487 - - mitochondrial carrier protein, putative [Ricinus communis]
19 Hb_004452_110 0.1135772292 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
20 Hb_000723_100 0.1140400358 - - phosphoglycerate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004994_050 Hb_004994_050 Hb_004531_140 Hb_004531_140 Hb_004994_050--Hb_004531_140 Hb_007919_100 Hb_007919_100 Hb_004994_050--Hb_007919_100 Hb_000579_120 Hb_000579_120 Hb_004994_050--Hb_000579_120 Hb_002947_030 Hb_002947_030 Hb_004994_050--Hb_002947_030 Hb_002073_190 Hb_002073_190 Hb_004994_050--Hb_002073_190 Hb_132840_110 Hb_132840_110 Hb_004994_050--Hb_132840_110 Hb_000479_250 Hb_000479_250 Hb_004531_140--Hb_000479_250 Hb_069662_010 Hb_069662_010 Hb_004531_140--Hb_069662_010 Hb_000181_130 Hb_000181_130 Hb_004531_140--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_004531_140--Hb_009328_020 Hb_109000_020 Hb_109000_020 Hb_004531_140--Hb_109000_020 Hb_002496_020 Hb_002496_020 Hb_004531_140--Hb_002496_020 Hb_032050_040 Hb_032050_040 Hb_007919_100--Hb_032050_040 Hb_152202_010 Hb_152202_010 Hb_007919_100--Hb_152202_010 Hb_007919_100--Hb_002947_030 Hb_006909_070 Hb_006909_070 Hb_007919_100--Hb_006909_070 Hb_002273_120 Hb_002273_120 Hb_007919_100--Hb_002273_120 Hb_000300_050 Hb_000300_050 Hb_007919_100--Hb_000300_050 Hb_000058_130 Hb_000058_130 Hb_000579_120--Hb_000058_130 Hb_001232_190 Hb_001232_190 Hb_000579_120--Hb_001232_190 Hb_000110_310 Hb_000110_310 Hb_000579_120--Hb_000110_310 Hb_009898_050 Hb_009898_050 Hb_000579_120--Hb_009898_050 Hb_000976_120 Hb_000976_120 Hb_000579_120--Hb_000976_120 Hb_000207_150 Hb_000207_150 Hb_000579_120--Hb_000207_150 Hb_007672_060 Hb_007672_060 Hb_002947_030--Hb_007672_060 Hb_033642_030 Hb_033642_030 Hb_002947_030--Hb_033642_030 Hb_019280_030 Hb_019280_030 Hb_002947_030--Hb_019280_030 Hb_007943_110 Hb_007943_110 Hb_002947_030--Hb_007943_110 Hb_007657_010 Hb_007657_010 Hb_002947_030--Hb_007657_010 Hb_000035_470 Hb_000035_470 Hb_002073_190--Hb_000035_470 Hb_015807_050 Hb_015807_050 Hb_002073_190--Hb_015807_050 Hb_000035_110 Hb_000035_110 Hb_002073_190--Hb_000035_110 Hb_000000_150 Hb_000000_150 Hb_002073_190--Hb_000000_150 Hb_001377_310 Hb_001377_310 Hb_002073_190--Hb_001377_310 Hb_002272_130 Hb_002272_130 Hb_002073_190--Hb_002272_130 Hb_000214_050 Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_001789_190 Hb_001789_190 Hb_132840_110--Hb_001789_190 Hb_000340_420 Hb_000340_420 Hb_132840_110--Hb_000340_420 Hb_000086_440 Hb_000086_440 Hb_132840_110--Hb_000086_440 Hb_001014_100 Hb_001014_100 Hb_132840_110--Hb_001014_100 Hb_002811_270 Hb_002811_270 Hb_132840_110--Hb_002811_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4304 14.8914 21.7656 30.9396 23.3675 23.6268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.3934 13.4022 11.295 10.9836 29.7809

CAGE analysis