Hb_004994_090

Information

Type -
Description -
Location Contig4994: 58356-59326
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15690g
description POPTRDRAFT_552131; thioesterase family protein
nr
ID XP_012083461.1
description PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KA40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14445 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45627: 58356-59242 , PASA_asmbl_45628: 59715-60731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_090 0.0 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
2 Hb_000009_330 0.0785348109 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
3 Hb_000059_020 0.0790345403 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
4 Hb_001935_140 0.095969041 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
5 Hb_000302_200 0.0971083999 - - ornithine cyclodeaminase, putative [Ricinus communis]
6 Hb_000406_110 0.0995285355 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
7 Hb_008948_140 0.100550043 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
8 Hb_004648_050 0.1017465398 - - ring finger protein, putative [Ricinus communis]
9 Hb_000105_040 0.1025708723 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
10 Hb_006910_060 0.1031096004 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
11 Hb_000862_040 0.1034797777 - - ara4-interacting protein, putative [Ricinus communis]
12 Hb_006573_210 0.1034986086 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
13 Hb_001541_250 0.1040229393 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
14 Hb_001031_090 0.1046307665 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
15 Hb_007054_040 0.1049611962 - - PREDICTED: protein RST1 [Jatropha curcas]
16 Hb_032808_030 0.1074681356 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_003120_080 0.1078699548 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
18 Hb_012539_110 0.1093115997 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
19 Hb_011287_050 0.1097242409 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
20 Hb_012799_140 0.1107207294 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004994_090 Hb_004994_090 Hb_000009_330 Hb_000009_330 Hb_004994_090--Hb_000009_330 Hb_000059_020 Hb_000059_020 Hb_004994_090--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_004994_090--Hb_001935_140 Hb_000302_200 Hb_000302_200 Hb_004994_090--Hb_000302_200 Hb_000406_110 Hb_000406_110 Hb_004994_090--Hb_000406_110 Hb_008948_140 Hb_008948_140 Hb_004994_090--Hb_008948_140 Hb_000009_330--Hb_000059_020 Hb_000169_170 Hb_000169_170 Hb_000009_330--Hb_000169_170 Hb_000862_040 Hb_000862_040 Hb_000009_330--Hb_000862_040 Hb_000236_410 Hb_000236_410 Hb_000009_330--Hb_000236_410 Hb_007054_040 Hb_007054_040 Hb_000009_330--Hb_007054_040 Hb_000059_020--Hb_000862_040 Hb_000940_200 Hb_000940_200 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_000105_040 Hb_000105_040 Hb_001935_140--Hb_000105_040 Hb_001541_250 Hb_001541_250 Hb_001935_140--Hb_001541_250 Hb_001935_140--Hb_007054_040 Hb_001935_140--Hb_000862_040 Hb_003581_170 Hb_003581_170 Hb_001935_140--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_001935_140--Hb_005542_140 Hb_000792_040 Hb_000792_040 Hb_000302_200--Hb_000792_040 Hb_006501_160 Hb_006501_160 Hb_000302_200--Hb_006501_160 Hb_001031_090 Hb_001031_090 Hb_000302_200--Hb_001031_090 Hb_005215_020 Hb_005215_020 Hb_000302_200--Hb_005215_020 Hb_002995_040 Hb_002995_040 Hb_000302_200--Hb_002995_040 Hb_002400_140 Hb_002400_140 Hb_000406_110--Hb_002400_140 Hb_144744_010 Hb_144744_010 Hb_000406_110--Hb_144744_010 Hb_004648_050 Hb_004648_050 Hb_000406_110--Hb_004648_050 Hb_000406_110--Hb_000059_020 Hb_032808_030 Hb_032808_030 Hb_000406_110--Hb_032808_030 Hb_006573_210 Hb_006573_210 Hb_000406_110--Hb_006573_210 Hb_000479_240 Hb_000479_240 Hb_008948_140--Hb_000479_240 Hb_000856_300 Hb_000856_300 Hb_008948_140--Hb_000856_300 Hb_001341_160 Hb_001341_160 Hb_008948_140--Hb_001341_160 Hb_008948_140--Hb_000862_040 Hb_001723_010 Hb_001723_010 Hb_008948_140--Hb_001723_010 Hb_000926_150 Hb_000926_150 Hb_008948_140--Hb_000926_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.62589 20.3673 6.7298 12.8174 7.62583 8.41726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.52124 5.54533 2.99992 14.6516 7.21104

CAGE analysis