Hb_004994_140

Information

Type -
Description -
Location Contig4994: 79918-84317
Sequence    

Annotation

kegg
ID rcu:RCOM_1614470
description UDP-galactose:MGDG galactosyltransferase, putative
nr
ID XP_012083452.1
description PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q6DW73
description Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1
trembl
ID A0A067K8S4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14441 PE=4 SV=1
Gene Ontology
ID GO:0005622
description digalactosyldiacylglycerol synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45631: 79669-83912 , PASA_asmbl_45632: 80541-80716
cDNA
(Sanger)
(ID:Location)		 050_L14.ab1: 82267-83854

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_140 0.0 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
2 Hb_000069_420 0.0575188612 - - Beclin-1, putative [Ricinus communis]
3 Hb_007416_320 0.0753313167 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012107_060 0.0794038121 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
5 Hb_003376_350 0.080114183 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
6 Hb_005846_040 0.0828966412 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
7 Hb_000062_220 0.0830241753 - - BnaC02g35870D [Brassica napus]
8 Hb_000189_560 0.0870845147 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
9 Hb_000866_220 0.0874869403 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
10 Hb_000032_270 0.088309181 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
11 Hb_011214_020 0.0896981929 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
12 Hb_001633_210 0.0904491089 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
13 Hb_000178_130 0.0906555526 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
14 Hb_012019_010 0.0908145156 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
15 Hb_000679_090 0.0909077079 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
16 Hb_000710_060 0.0909914169 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
17 Hb_011173_050 0.0913869854 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
18 Hb_000417_040 0.0919305821 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
19 Hb_001159_110 0.0922972302 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
20 Hb_001157_040 0.0930095274 - - casein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004994_140 Hb_004994_140 Hb_000069_420 Hb_000069_420 Hb_004994_140--Hb_000069_420 Hb_007416_320 Hb_007416_320 Hb_004994_140--Hb_007416_320 Hb_012107_060 Hb_012107_060 Hb_004994_140--Hb_012107_060 Hb_003376_350 Hb_003376_350 Hb_004994_140--Hb_003376_350 Hb_005846_040 Hb_005846_040 Hb_004994_140--Hb_005846_040 Hb_000062_220 Hb_000062_220 Hb_004994_140--Hb_000062_220 Hb_003994_260 Hb_003994_260 Hb_000069_420--Hb_003994_260 Hb_004324_090 Hb_004324_090 Hb_000069_420--Hb_004324_090 Hb_000069_420--Hb_005846_040 Hb_000250_060 Hb_000250_060 Hb_000069_420--Hb_000250_060 Hb_001633_210 Hb_001633_210 Hb_000069_420--Hb_001633_210 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_012107_060--Hb_004324_090 Hb_012107_060--Hb_000069_420 Hb_158445_010 Hb_158445_010 Hb_012107_060--Hb_158445_010 Hb_002878_020 Hb_002878_020 Hb_012107_060--Hb_002878_020 Hb_012107_060--Hb_000250_060 Hb_004907_110 Hb_004907_110 Hb_003376_350--Hb_004907_110 Hb_002631_060 Hb_002631_060 Hb_003376_350--Hb_002631_060 Hb_000926_330 Hb_000926_330 Hb_003376_350--Hb_000926_330 Hb_000189_560 Hb_000189_560 Hb_003376_350--Hb_000189_560 Hb_007532_030 Hb_007532_030 Hb_003376_350--Hb_007532_030 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_005779_060 Hb_005779_060 Hb_000062_220--Hb_005779_060 Hb_000062_220--Hb_000876_070 Hb_012019_010 Hb_012019_010 Hb_000062_220--Hb_012019_010 Hb_010422_060 Hb_010422_060 Hb_000062_220--Hb_010422_060 Hb_008725_260 Hb_008725_260 Hb_000062_220--Hb_008725_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.201 27.4736 11.2398 16.9848 17.809 16.2471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4055 42.1438 28.6069 19.4459 11.2171

CAGE analysis