Hb_004994_170

Information

Type -
Description -
Location Contig4994: 97625-100466
Sequence    

Annotation

kegg
ID rcu:RCOM_1614510
description hypothetical protein
nr
ID XP_012083445.1
description PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14437 PE=4 SV=1
Gene Ontology
ID GO:0005747
description PREDICTED: uncharacterized protein LOC105643024

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45633: 97739-100466 , PASA_asmbl_45634: 97776-98428 , PASA_asmbl_45635: 97799-100469
cDNA
(Sanger)
(ID:Location)		 021_B07.ab1: 97783-100367 , 021_I01.ab1: 97757-100469

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_170 0.0 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
2 Hb_000317_030 0.0807136867 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
3 Hb_004204_070 0.0825437147 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
4 Hb_001404_100 0.0825742465 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
5 Hb_000576_010 0.0911737497 - - PREDICTED: uncharacterized protein LOC105638289 [Jatropha curcas]
6 Hb_001135_050 0.0929524976 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
7 Hb_001246_090 0.0936920153 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
8 Hb_000023_230 0.0959823457 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
9 Hb_002205_080 0.0978231177 - - 40S ribosomal protein S26, putative [Ricinus communis]
10 Hb_002272_250 0.0978991982 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_003732_020 0.1022695754 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
12 Hb_000412_110 0.1034698373 - - Rop4 [Hevea brasiliensis]
13 Hb_000392_440 0.1037723243 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
14 Hb_004223_130 0.104650015 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000676_220 0.1048242596 - - ADP-ribosylation factor, putative [Ricinus communis]
16 Hb_003540_040 0.1064155032 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
17 Hb_001257_080 0.107203553 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002685_140 0.1080156534 - - PREDICTED: membrin-11 [Jatropha curcas]
19 Hb_001604_010 0.1089403017 - - 14-3-3 protein, putative [Ricinus communis]
20 Hb_003207_190 0.1095908492 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Populus euphratica]

Gene co-expression network

sample Hb_004994_170 Hb_004994_170 Hb_000317_030 Hb_000317_030 Hb_004994_170--Hb_000317_030 Hb_004204_070 Hb_004204_070 Hb_004994_170--Hb_004204_070 Hb_001404_100 Hb_001404_100 Hb_004994_170--Hb_001404_100 Hb_000576_010 Hb_000576_010 Hb_004994_170--Hb_000576_010 Hb_001135_050 Hb_001135_050 Hb_004994_170--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_004994_170--Hb_001246_090 Hb_000317_030--Hb_000576_010 Hb_001671_080 Hb_001671_080 Hb_000317_030--Hb_001671_080 Hb_002681_110 Hb_002681_110 Hb_000317_030--Hb_002681_110 Hb_004223_130 Hb_004223_130 Hb_000317_030--Hb_004223_130 Hb_002527_070 Hb_002527_070 Hb_000317_030--Hb_002527_070 Hb_011794_090 Hb_011794_090 Hb_004204_070--Hb_011794_090 Hb_002272_250 Hb_002272_250 Hb_004204_070--Hb_002272_250 Hb_000141_060 Hb_000141_060 Hb_004204_070--Hb_000141_060 Hb_010661_030 Hb_010661_030 Hb_004204_070--Hb_010661_030 Hb_004204_070--Hb_001404_100 Hb_001404_100--Hb_010661_030 Hb_005993_040 Hb_005993_040 Hb_001404_100--Hb_005993_040 Hb_000771_120 Hb_000771_120 Hb_001404_100--Hb_000771_120 Hb_002233_150 Hb_002233_150 Hb_001404_100--Hb_002233_150 Hb_002043_190 Hb_002043_190 Hb_001404_100--Hb_002043_190 Hb_004491_010 Hb_004491_010 Hb_001404_100--Hb_004491_010 Hb_000576_010--Hb_004204_070 Hb_000576_010--Hb_004223_130 Hb_010381_070 Hb_010381_070 Hb_000576_010--Hb_010381_070 Hb_000975_290 Hb_000975_290 Hb_000576_010--Hb_000975_290 Hb_001135_050--Hb_001246_090 Hb_003392_040 Hb_003392_040 Hb_001135_050--Hb_003392_040 Hb_000169_010 Hb_000169_010 Hb_001135_050--Hb_000169_010 Hb_007254_040 Hb_007254_040 Hb_001135_050--Hb_007254_040 Hb_000638_080 Hb_000638_080 Hb_001135_050--Hb_000638_080 Hb_004048_070 Hb_004048_070 Hb_001135_050--Hb_004048_070 Hb_000494_020 Hb_000494_020 Hb_001246_090--Hb_000494_020 Hb_022250_040 Hb_022250_040 Hb_001246_090--Hb_022250_040 Hb_001246_090--Hb_003392_040 Hb_002105_090 Hb_002105_090 Hb_001246_090--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_001246_090--Hb_004324_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
182.195 39.7788 86.1582 23.5095 140.718 120.307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
203.32 160.212 155.047 74.5544 21.3662

CAGE analysis