Hb_004994_210

Information

Type -
Description -
Location Contig4994: 142473-146513
Sequence    

Annotation

kegg
ID pop:POPTR_0014s07630g
description phosphomannomutase family protein
nr
ID XP_006375330.1
description phosphomannomutase family protein [Populus trichocarpa]
swissprot
ID Q1W376
description Phosphomannomutase OS=Glycine max PE=2 SV=1
trembl
ID A9PI53
description Phosphomannomutase OS=Populus trichocarpa GN=POPTR_0014s07630g PE=2 SV=1
Gene Ontology
ID GO:0005829
description phosphomannomutase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45640: 142494-146726 , PASA_asmbl_45641: 145019-145202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_210 0.0 - - phosphomannomutase family protein [Populus trichocarpa]
2 Hb_001633_090 0.0746324832 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
3 Hb_000076_220 0.0820181211 - - thioredoxin domain-containing protein, putative [Ricinus communis]
4 Hb_053709_050 0.0832475071 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_007850_030 0.0845670393 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
6 Hb_000174_260 0.0981807798 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
7 Hb_006538_090 0.1018916899 - - PREDICTED: IST1 homolog [Jatropha curcas]
8 Hb_000130_270 0.1025721033 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
9 Hb_001804_090 0.1029098142 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
10 Hb_003207_180 0.1035639177 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
11 Hb_000832_190 0.1064515061 - - Rab3 [Hevea brasiliensis]
12 Hb_001221_030 0.1076053248 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
13 Hb_000392_340 0.1077301642 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
14 Hb_000062_330 0.1077669497 - - unknown [Lotus japonicus]
15 Hb_002811_290 0.1078837747 - - aldo/keto reductase, putative [Ricinus communis]
16 Hb_000260_470 0.1079592902 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
17 Hb_000742_010 0.1081279671 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_004984_030 0.1113515478 - - protein with unknown function [Ricinus communis]
19 Hb_000774_020 0.1116513877 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
20 Hb_003058_120 0.1124850356 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004994_210 Hb_004994_210 Hb_001633_090 Hb_001633_090 Hb_004994_210--Hb_001633_090 Hb_000076_220 Hb_000076_220 Hb_004994_210--Hb_000076_220 Hb_053709_050 Hb_053709_050 Hb_004994_210--Hb_053709_050 Hb_007850_030 Hb_007850_030 Hb_004994_210--Hb_007850_030 Hb_000174_260 Hb_000174_260 Hb_004994_210--Hb_000174_260 Hb_006538_090 Hb_006538_090 Hb_004994_210--Hb_006538_090 Hb_001633_090--Hb_053709_050 Hb_001633_090--Hb_007850_030 Hb_007741_130 Hb_007741_130 Hb_001633_090--Hb_007741_130 Hb_002693_030 Hb_002693_030 Hb_001633_090--Hb_002693_030 Hb_000742_010 Hb_000742_010 Hb_001633_090--Hb_000742_010 Hb_003058_120 Hb_003058_120 Hb_000076_220--Hb_003058_120 Hb_000853_150 Hb_000853_150 Hb_000076_220--Hb_000853_150 Hb_000774_020 Hb_000774_020 Hb_000076_220--Hb_000774_020 Hb_006846_130 Hb_006846_130 Hb_000076_220--Hb_006846_130 Hb_000130_270 Hb_000130_270 Hb_000076_220--Hb_000130_270 Hb_000260_470 Hb_000260_470 Hb_000076_220--Hb_000260_470 Hb_053709_050--Hb_007850_030 Hb_006637_030 Hb_006637_030 Hb_053709_050--Hb_006637_030 Hb_000603_160 Hb_000603_160 Hb_053709_050--Hb_000603_160 Hb_053709_050--Hb_002693_030 Hb_189216_010 Hb_189216_010 Hb_053709_050--Hb_189216_010 Hb_007850_030--Hb_002693_030 Hb_001482_050 Hb_001482_050 Hb_007850_030--Hb_001482_050 Hb_000227_390 Hb_000227_390 Hb_007850_030--Hb_000227_390 Hb_005276_040 Hb_005276_040 Hb_000174_260--Hb_005276_040 Hb_001221_030 Hb_001221_030 Hb_000174_260--Hb_001221_030 Hb_003605_020 Hb_003605_020 Hb_000174_260--Hb_003605_020 Hb_000330_090 Hb_000330_090 Hb_000174_260--Hb_000330_090 Hb_000684_030 Hb_000684_030 Hb_000174_260--Hb_000684_030 Hb_001269_130 Hb_001269_130 Hb_000174_260--Hb_001269_130 Hb_168893_020 Hb_168893_020 Hb_006538_090--Hb_168893_020 Hb_004005_020 Hb_004005_020 Hb_006538_090--Hb_004005_020 Hb_000538_120 Hb_000538_120 Hb_006538_090--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_006538_090--Hb_001301_110 Hb_015057_020 Hb_015057_020 Hb_006538_090--Hb_015057_020 Hb_006538_090--Hb_003058_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.25541 6.87586 25.1693 21.2523 5.37731 4.90342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6045 15.0525 10.3788 14.0319 10.0933

CAGE analysis