Hb_004994_220

Information

Type -
Description -
Location Contig4994: 146894-167301
Sequence    

Annotation

kegg
ID rcu:RCOM_1614600
description Glutathione-regulated potassium-efflux system protein kefB, putative
nr
ID XP_012083434.1
description PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
swissprot
ID O65272
description K(+) efflux antiporter 2, chloroplastic OS=Arabidopsis thaliana GN=KEA2 PE=1 SV=2
trembl
ID A0A067K0S4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14429 PE=4 SV=1
Gene Ontology
ID GO:0016021
description k(+) efflux antiporter chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45643: 147146-161454 , PASA_asmbl_45644: 162422-167083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_220 0.0 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
2 Hb_002740_110 0.0655932412 - - PREDICTED: phytochrome A [Jatropha curcas]
3 Hb_001341_170 0.0658787668 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
4 Hb_010174_110 0.0680373718 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
5 Hb_000028_280 0.0704707774 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
6 Hb_000890_210 0.0705256384 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
7 Hb_000260_270 0.0715829126 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000556_160 0.0725133943 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
9 Hb_000123_210 0.0726191012 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
10 Hb_006831_040 0.0729019851 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
11 Hb_000999_050 0.0743926302 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
12 Hb_000329_470 0.0746743546 - - ccr4-not transcription complex, putative [Ricinus communis]
13 Hb_000061_460 0.0773807508 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
14 Hb_003253_040 0.0785769747 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
15 Hb_004143_130 0.0786837917 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
16 Hb_000225_040 0.0787150626 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
17 Hb_001143_160 0.0787435564 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
18 Hb_000395_190 0.0810505569 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
19 Hb_011485_070 0.0813269416 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
20 Hb_000002_010 0.081566388 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]

Gene co-expression network

sample Hb_004994_220 Hb_004994_220 Hb_002740_110 Hb_002740_110 Hb_004994_220--Hb_002740_110 Hb_001341_170 Hb_001341_170 Hb_004994_220--Hb_001341_170 Hb_010174_110 Hb_010174_110 Hb_004994_220--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_004994_220--Hb_000028_280 Hb_000890_210 Hb_000890_210 Hb_004994_220--Hb_000890_210 Hb_000260_270 Hb_000260_270 Hb_004994_220--Hb_000260_270 Hb_003253_040 Hb_003253_040 Hb_002740_110--Hb_003253_040 Hb_002740_110--Hb_010174_110 Hb_002740_110--Hb_000028_280 Hb_004032_380 Hb_004032_380 Hb_002740_110--Hb_004032_380 Hb_004143_130 Hb_004143_130 Hb_002740_110--Hb_004143_130 Hb_004724_150 Hb_004724_150 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_001341_170--Hb_000890_210 Hb_000556_160 Hb_000556_160 Hb_001341_170--Hb_000556_160 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010 Hb_010174_110--Hb_003253_040 Hb_000002_010 Hb_000002_010 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_010174_110--Hb_004143_130 Hb_000343_120 Hb_000343_120 Hb_000028_280--Hb_000343_120 Hb_000028_280--Hb_004143_130 Hb_003605_110 Hb_003605_110 Hb_000028_280--Hb_003605_110 Hb_000028_280--Hb_003253_040 Hb_000890_210--Hb_000107_490 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310 Hb_000245_040 Hb_000245_040 Hb_000890_210--Hb_000245_040 Hb_000395_190 Hb_000395_190 Hb_000260_270--Hb_000395_190 Hb_005731_130 Hb_005731_130 Hb_000260_270--Hb_005731_130 Hb_011218_040 Hb_011218_040 Hb_000260_270--Hb_011218_040 Hb_000329_470 Hb_000329_470 Hb_000260_270--Hb_000329_470 Hb_002631_060 Hb_002631_060 Hb_000260_270--Hb_002631_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4012 11.0833 4.11693 7.84399 11.9188 13.3283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5025 8.67215 15.0987 15.7139 8.07605

CAGE analysis