Hb_004994_250

Information

Type transcription factor
Description TF Family: MYB
Location Contig4994: 206148-207935
Sequence    

Annotation

kegg
ID rcu:RCOM_1614750
description r2r3-myb transcription factor, putative
nr
ID XP_012083427.1
description PREDICTED: transcription repressor MYB6 [Jatropha curcas]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A067K0R8
description MYB family protein OS=Jatropha curcas GN=JCGZ_14424 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 308

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_250 0.0 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
2 Hb_031822_010 0.1504293052 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
3 Hb_004631_200 0.1530353768 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000072_190 0.1684708965 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
5 Hb_001769_110 0.1689275251 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
6 Hb_000003_240 0.1696868194 - - conserved hypothetical protein [Ricinus communis]
7 Hb_013358_020 0.1745182972 - - ccr4-associated factor, putative [Ricinus communis]
8 Hb_000637_020 0.176731213 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
9 Hb_084849_010 0.1835700343 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000749_070 0.1837906765 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
11 Hb_007253_010 0.1866994629 - - syntaxin, putative [Ricinus communis]
12 Hb_000020_100 0.194149624 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
13 Hb_000035_050 0.1955428993 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
14 Hb_155946_030 0.1975533697 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
15 Hb_006018_050 0.1982420651 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
16 Hb_001579_070 0.1992602252 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
17 Hb_018790_050 0.1993591242 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
18 Hb_000445_100 0.2013228452 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
19 Hb_005714_100 0.2015975577 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
20 Hb_003633_100 0.2029479941 - - hypoia-responsive family protein 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004994_250 Hb_004994_250 Hb_031822_010 Hb_031822_010 Hb_004994_250--Hb_031822_010 Hb_004631_200 Hb_004631_200 Hb_004994_250--Hb_004631_200 Hb_000072_190 Hb_000072_190 Hb_004994_250--Hb_000072_190 Hb_001769_110 Hb_001769_110 Hb_004994_250--Hb_001769_110 Hb_000003_240 Hb_000003_240 Hb_004994_250--Hb_000003_240 Hb_013358_020 Hb_013358_020 Hb_004994_250--Hb_013358_020 Hb_031822_010--Hb_000072_190 Hb_003147_070 Hb_003147_070 Hb_031822_010--Hb_003147_070 Hb_000046_310 Hb_000046_310 Hb_031822_010--Hb_000046_310 Hb_018790_050 Hb_018790_050 Hb_031822_010--Hb_018790_050 Hb_031822_010--Hb_013358_020 Hb_000749_070 Hb_000749_070 Hb_004631_200--Hb_000749_070 Hb_004631_200--Hb_013358_020 Hb_004631_200--Hb_000072_190 Hb_000637_020 Hb_000637_020 Hb_004631_200--Hb_000637_020 Hb_000445_100 Hb_000445_100 Hb_004631_200--Hb_000445_100 Hb_000072_190--Hb_013358_020 Hb_084849_010 Hb_084849_010 Hb_000072_190--Hb_084849_010 Hb_000072_190--Hb_000749_070 Hb_006018_050 Hb_006018_050 Hb_000072_190--Hb_006018_050 Hb_041895_040 Hb_041895_040 Hb_001769_110--Hb_041895_040 Hb_001769_110--Hb_000445_100 Hb_007253_010 Hb_007253_010 Hb_001769_110--Hb_007253_010 Hb_001769_110--Hb_000749_070 Hb_159809_050 Hb_159809_050 Hb_001769_110--Hb_159809_050 Hb_015026_040 Hb_015026_040 Hb_001769_110--Hb_015026_040 Hb_001579_070 Hb_001579_070 Hb_000003_240--Hb_001579_070 Hb_001242_180 Hb_001242_180 Hb_000003_240--Hb_001242_180 Hb_000680_180 Hb_000680_180 Hb_000003_240--Hb_000680_180 Hb_002876_070 Hb_002876_070 Hb_000003_240--Hb_002876_070 Hb_001519_060 Hb_001519_060 Hb_000003_240--Hb_001519_060 Hb_011930_120 Hb_011930_120 Hb_000003_240--Hb_011930_120 Hb_013358_020--Hb_000749_070 Hb_000035_050 Hb_000035_050 Hb_013358_020--Hb_000035_050 Hb_013358_020--Hb_007253_010 Hb_004117_170 Hb_004117_170 Hb_013358_020--Hb_004117_170 Hb_013358_020--Hb_018790_050 Hb_013358_020--Hb_084849_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.293041 2.39093 2.6071 2.58102 0.0704244 0.0751196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.658112 0.560701 0.316178 0.138982 0.087819

CAGE analysis