Hb_004994_260

Information

Type -
Description -
Location Contig4994: 208456-212552
Sequence    

Annotation

kegg
ID rcu:RCOM_1614760
description Remorin, putative
nr
ID XP_002511833.1
description Remorin, putative [Ricinus communis]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9RDP4
description Remorin, putative OS=Ricinus communis GN=RCOM_1614760 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45648: 207241-212467 , PASA_asmbl_45649: 210690-210876 , PASA_asmbl_45651: 210165-210365
cDNA
(Sanger)
(ID:Location)		 009_P19.ab1: 208471-212377

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_260 0.0 - - Remorin, putative [Ricinus communis]
2 Hb_002214_050 0.0818378443 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
3 Hb_000907_090 0.0898175702 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_007926_060 0.0932319813 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
5 Hb_010344_040 0.1104381253 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
6 Hb_000722_040 0.1133014782 - - -
7 Hb_023386_010 0.1162725896 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
8 Hb_001912_010 0.1196357833 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
9 Hb_004449_200 0.1205852882 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
10 Hb_010172_030 0.1206163629 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
11 Hb_000172_030 0.1207432726 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
12 Hb_003561_030 0.1207751871 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
13 Hb_000364_020 0.1215481074 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
14 Hb_001687_040 0.1216536059 - - actin-depolymerizing factor [Hevea brasiliensis]
15 Hb_000333_090 0.1219043309 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
16 Hb_002571_020 0.1220004135 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
17 Hb_008511_110 0.1227942858 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
18 Hb_011161_050 0.125441306 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
19 Hb_003893_090 0.1255607517 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
20 Hb_000975_110 0.1259207815 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]

Gene co-expression network

sample Hb_004994_260 Hb_004994_260 Hb_002214_050 Hb_002214_050 Hb_004994_260--Hb_002214_050 Hb_000907_090 Hb_000907_090 Hb_004994_260--Hb_000907_090 Hb_007926_060 Hb_007926_060 Hb_004994_260--Hb_007926_060 Hb_010344_040 Hb_010344_040 Hb_004994_260--Hb_010344_040 Hb_000722_040 Hb_000722_040 Hb_004994_260--Hb_000722_040 Hb_023386_010 Hb_023386_010 Hb_004994_260--Hb_023386_010 Hb_010172_030 Hb_010172_030 Hb_002214_050--Hb_010172_030 Hb_001437_220 Hb_001437_220 Hb_002214_050--Hb_001437_220 Hb_000333_090 Hb_000333_090 Hb_002214_050--Hb_000333_090 Hb_000362_210 Hb_000362_210 Hb_002214_050--Hb_000362_210 Hb_002214_050--Hb_000907_090 Hb_004738_010 Hb_004738_010 Hb_000907_090--Hb_004738_010 Hb_162275_030 Hb_162275_030 Hb_000907_090--Hb_162275_030 Hb_000907_090--Hb_010344_040 Hb_002735_060 Hb_002735_060 Hb_000907_090--Hb_002735_060 Hb_004374_140 Hb_004374_140 Hb_007926_060--Hb_004374_140 Hb_004449_200 Hb_004449_200 Hb_007926_060--Hb_004449_200 Hb_008544_010 Hb_008544_010 Hb_007926_060--Hb_008544_010 Hb_006573_220 Hb_006573_220 Hb_007926_060--Hb_006573_220 Hb_001461_010 Hb_001461_010 Hb_007926_060--Hb_001461_010 Hb_001105_070 Hb_001105_070 Hb_007926_060--Hb_001105_070 Hb_010344_040--Hb_000333_090 Hb_010344_040--Hb_010172_030 Hb_000567_170 Hb_000567_170 Hb_010344_040--Hb_000567_170 Hb_001912_010 Hb_001912_010 Hb_010344_040--Hb_001912_010 Hb_010344_040--Hb_002214_050 Hb_000922_270 Hb_000922_270 Hb_010344_040--Hb_000922_270 Hb_003561_030 Hb_003561_030 Hb_000722_040--Hb_003561_030 Hb_000975_110 Hb_000975_110 Hb_000722_040--Hb_000975_110 Hb_000224_090 Hb_000224_090 Hb_000722_040--Hb_000224_090 Hb_000024_030 Hb_000024_030 Hb_000722_040--Hb_000024_030 Hb_001427_230 Hb_001427_230 Hb_000722_040--Hb_001427_230 Hb_011161_050 Hb_011161_050 Hb_000722_040--Hb_011161_050 Hb_054074_010 Hb_054074_010 Hb_023386_010--Hb_054074_010 Hb_001604_030 Hb_001604_030 Hb_023386_010--Hb_001604_030 Hb_000820_130 Hb_000820_130 Hb_023386_010--Hb_000820_130 Hb_001304_140 Hb_001304_140 Hb_023386_010--Hb_001304_140 Hb_000789_110 Hb_000789_110 Hb_023386_010--Hb_000789_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.674 46.6527 30.3273 162.04 93.0649 176.563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
466.14 327.94 229.941 52.391 27.2999

CAGE analysis