Hb_004994_300

Information

Type -
Description -
Location Contig4994: 249099-252140
Sequence    

Annotation

kegg
ID rcu:RCOM_1615010
description synaptotagmin, putative
nr
ID XP_002511838.1
description synaptotagmin, putative [Ricinus communis]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID B9RDP9
description Synaptotagmin, putative OS=Ricinus communis GN=RCOM_1615010 PE=4 SV=1
Gene Ontology
ID GO:0016021
description multiple c2 and transmembrane domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45652: 247653-249676 , PASA_asmbl_45653: 249711-251344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_300 0.0 - - synaptotagmin, putative [Ricinus communis]
2 Hb_003605_220 0.0834112863 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
3 Hb_007313_070 0.0936759465 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
4 Hb_000270_230 0.0966064115 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
5 Hb_172421_010 0.0974384526 - - cysteine protease [Hevea brasiliensis]
6 Hb_004032_310 0.0997758071 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
7 Hb_003752_120 0.1104876844 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
8 Hb_000460_060 0.1111388298 - - importin beta-1, putative [Ricinus communis]
9 Hb_000069_780 0.1130345594 - - atpob1, putative [Ricinus communis]
10 Hb_008686_020 0.115398234 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
11 Hb_048755_020 0.1158479714 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
12 Hb_006054_030 0.1163330922 - - PREDICTED: protein GPR107-like [Jatropha curcas]
13 Hb_000805_230 0.1183425267 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
14 Hb_002915_070 0.1195011975 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
15 Hb_004324_060 0.1201315795 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
16 Hb_001561_010 0.1201748552 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
17 Hb_001662_170 0.1202572262 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
18 Hb_002918_320 0.1203099526 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
19 Hb_000473_150 0.1207605239 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
20 Hb_002774_150 0.1228905963 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]

Gene co-expression network

sample Hb_004994_300 Hb_004994_300 Hb_003605_220 Hb_003605_220 Hb_004994_300--Hb_003605_220 Hb_007313_070 Hb_007313_070 Hb_004994_300--Hb_007313_070 Hb_000270_230 Hb_000270_230 Hb_004994_300--Hb_000270_230 Hb_172421_010 Hb_172421_010 Hb_004994_300--Hb_172421_010 Hb_004032_310 Hb_004032_310 Hb_004994_300--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_004994_300--Hb_003752_120 Hb_000460_060 Hb_000460_060 Hb_003605_220--Hb_000460_060 Hb_008686_020 Hb_008686_020 Hb_003605_220--Hb_008686_020 Hb_004696_070 Hb_004696_070 Hb_003605_220--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_003605_220--Hb_012490_010 Hb_001951_100 Hb_001951_100 Hb_003605_220--Hb_001951_100 Hb_048755_020 Hb_048755_020 Hb_007313_070--Hb_048755_020 Hb_007313_070--Hb_003605_220 Hb_001437_010 Hb_001437_010 Hb_007313_070--Hb_001437_010 Hb_007313_070--Hb_172421_010 Hb_002248_120 Hb_002248_120 Hb_007313_070--Hb_002248_120 Hb_000069_780 Hb_000069_780 Hb_000270_230--Hb_000069_780 Hb_000856_020 Hb_000856_020 Hb_000270_230--Hb_000856_020 Hb_000676_040 Hb_000676_040 Hb_000270_230--Hb_000676_040 Hb_001257_100 Hb_001257_100 Hb_000270_230--Hb_001257_100 Hb_006054_030 Hb_006054_030 Hb_000270_230--Hb_006054_030 Hb_000941_080 Hb_000941_080 Hb_000270_230--Hb_000941_080 Hb_004324_060 Hb_004324_060 Hb_172421_010--Hb_004324_060 Hb_172421_010--Hb_002248_120 Hb_001951_240 Hb_001951_240 Hb_172421_010--Hb_001951_240 Hb_013405_180 Hb_013405_180 Hb_172421_010--Hb_013405_180 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_001662_170 Hb_001662_170 Hb_004032_310--Hb_001662_170 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_012787_040 Hb_012787_040 Hb_003752_120--Hb_012787_040 Hb_003752_120--Hb_001662_170 Hb_003752_120--Hb_002915_070 Hb_003752_120--Hb_000069_780 Hb_103788_010 Hb_103788_010 Hb_003752_120--Hb_103788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.76094 90.0199 20.926 31.2529 14.0841 13.6319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.92116 7.18061 8.95834 16.6806 30.8647

CAGE analysis