Hb_004994_320

Information

Type -
Description -
Location Contig4994: 254451-257151
Sequence    

Annotation

kegg
ID cam:101500654
description putative ripening-related protein 2-like
nr
ID XP_004500188.1
description PREDICTED: putative ripening-related protein 1 [Cicer arietinum]
swissprot
ID Q8LN49
description Putative ripening-related protein 5 OS=Oryza sativa subsp. japonica GN=Os10g0490500 PE=3 SV=1
trembl
ID K7KC33
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005524
description ripening-related protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45655: 254276-254486 , PASA_asmbl_45656: 256953-257230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_320 0.0 - - PREDICTED: putative ripening-related protein 1 [Cicer arietinum]
2 Hb_118977_010 0.1615846558 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004668_110 0.1655307463 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001373_110 0.1720672681 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
5 Hb_007101_160 0.1769334756 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001377_030 0.1822891586 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
7 Hb_002450_040 0.1843873655 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
8 Hb_007313_090 0.1899595715 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000976_260 0.1978245325 - - -
10 Hb_000189_310 0.1983087822 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
11 Hb_003050_110 0.1989031214 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]
12 Hb_000958_130 0.2002391091 - - PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]
13 Hb_002184_150 0.2008771519 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_002596_030 0.2033128812 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
15 Hb_001476_070 0.2037063017 - - MinE protein [Manihot esculenta]
16 Hb_005085_020 0.2048636027 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
17 Hb_000228_090 0.2053168069 - - PREDICTED: protein PAM68, chloroplastic [Jatropha curcas]
18 Hb_011013_010 0.2078304174 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_000700_150 0.2114625754 - - conserved hypothetical protein [Ricinus communis]
20 Hb_029142_030 0.2138397791 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_004994_320 Hb_004994_320 Hb_118977_010 Hb_118977_010 Hb_004994_320--Hb_118977_010 Hb_004668_110 Hb_004668_110 Hb_004994_320--Hb_004668_110 Hb_001373_110 Hb_001373_110 Hb_004994_320--Hb_001373_110 Hb_007101_160 Hb_007101_160 Hb_004994_320--Hb_007101_160 Hb_001377_030 Hb_001377_030 Hb_004994_320--Hb_001377_030 Hb_002450_040 Hb_002450_040 Hb_004994_320--Hb_002450_040 Hb_004846_040 Hb_004846_040 Hb_118977_010--Hb_004846_040 Hb_002184_150 Hb_002184_150 Hb_118977_010--Hb_002184_150 Hb_000198_070 Hb_000198_070 Hb_118977_010--Hb_000198_070 Hb_001266_140 Hb_001266_140 Hb_118977_010--Hb_001266_140 Hb_163950_030 Hb_163950_030 Hb_118977_010--Hb_163950_030 Hb_184134_010 Hb_184134_010 Hb_004668_110--Hb_184134_010 Hb_044662_060 Hb_044662_060 Hb_004668_110--Hb_044662_060 Hb_002750_050 Hb_002750_050 Hb_004668_110--Hb_002750_050 Hb_000189_510 Hb_000189_510 Hb_004668_110--Hb_000189_510 Hb_004668_110--Hb_001373_110 Hb_004668_110--Hb_002450_040 Hb_140833_010 Hb_140833_010 Hb_001373_110--Hb_140833_010 Hb_011013_010 Hb_011013_010 Hb_001373_110--Hb_011013_010 Hb_000661_140 Hb_000661_140 Hb_001373_110--Hb_000661_140 Hb_000976_260 Hb_000976_260 Hb_001373_110--Hb_000976_260 Hb_000012_020 Hb_000012_020 Hb_001373_110--Hb_000012_020 Hb_001373_110--Hb_002450_040 Hb_000424_020 Hb_000424_020 Hb_007101_160--Hb_000424_020 Hb_000390_310 Hb_000390_310 Hb_007101_160--Hb_000390_310 Hb_000958_130 Hb_000958_130 Hb_007101_160--Hb_000958_130 Hb_000436_100 Hb_000436_100 Hb_007101_160--Hb_000436_100 Hb_001956_040 Hb_001956_040 Hb_007101_160--Hb_001956_040 Hb_007313_090 Hb_007313_090 Hb_007101_160--Hb_007313_090 Hb_003050_110 Hb_003050_110 Hb_001377_030--Hb_003050_110 Hb_001377_030--Hb_002450_040 Hb_000000_360 Hb_000000_360 Hb_001377_030--Hb_000000_360 Hb_001377_030--Hb_140833_010 Hb_004934_030 Hb_004934_030 Hb_001377_030--Hb_004934_030 Hb_000260_800 Hb_000260_800 Hb_001377_030--Hb_000260_800 Hb_000926_180 Hb_000926_180 Hb_002450_040--Hb_000926_180 Hb_002450_040--Hb_007313_090 Hb_000297_110 Hb_000297_110 Hb_002450_040--Hb_000297_110 Hb_002450_040--Hb_000976_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.743875 0.0309649 1.54348 0.295647 0.594952 1.25349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.493694 0.776346 0.199994 0.0898872 0.443756

CAGE analysis