Hb_004994_330

Information

Type -
Description -
Location Contig4994: 257327-262650
Sequence    

Annotation

kegg
ID rcu:RCOM_1615060
description DNA binding protein, putative
nr
ID XP_002511843.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID O80834
description AT-hook motif nuclear-localized protein 9 OS=Arabidopsis thaliana GN=AHL9 PE=2 SV=1
trembl
ID B9RDQ4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1615060 PE=4 SV=1
Gene Ontology
ID GO:0003677
description at-hook motif nuclear-localized protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45657: 257267-262349 , PASA_asmbl_45658: 257267-262349 , PASA_asmbl_45659: 257267-262349 , PASA_asmbl_45660: 257267-262349 , PASA_asmbl_45661: 260628-260828 , PASA_asmbl_45662: 259613-259846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_330 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_001180_010 0.0809457559 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
3 Hb_002662_110 0.0864504101 - - Kinesin heavy chain, putative [Ricinus communis]
4 Hb_000465_410 0.0978707284 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001544_050 0.0981885478 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
6 Hb_000417_050 0.1037680496 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
7 Hb_000207_350 0.105078976 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
8 Hb_000076_030 0.1123752202 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
9 Hb_002701_070 0.1136771366 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
10 Hb_000388_080 0.1146061641 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
11 Hb_010381_040 0.1172134914 - - beta-galactosidase, putative [Ricinus communis]
12 Hb_000390_210 0.119469349 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_001433_150 0.1205566591 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000357_070 0.1215205664 - - -
15 Hb_000689_050 0.121935569 - - conserved hypothetical protein [Ricinus communis]
16 Hb_022693_110 0.1224461902 - - phosphate transporter [Manihot esculenta]
17 Hb_000076_250 0.1261664785 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000322_030 0.1267303217 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
19 Hb_143004_020 0.1267847894 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
20 Hb_000749_260 0.1270582248 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004994_330 Hb_004994_330 Hb_001180_010 Hb_001180_010 Hb_004994_330--Hb_001180_010 Hb_002662_110 Hb_002662_110 Hb_004994_330--Hb_002662_110 Hb_000465_410 Hb_000465_410 Hb_004994_330--Hb_000465_410 Hb_001544_050 Hb_001544_050 Hb_004994_330--Hb_001544_050 Hb_000417_050 Hb_000417_050 Hb_004994_330--Hb_000417_050 Hb_000207_350 Hb_000207_350 Hb_004994_330--Hb_000207_350 Hb_001180_010--Hb_001544_050 Hb_000076_030 Hb_000076_030 Hb_001180_010--Hb_000076_030 Hb_048476_140 Hb_048476_140 Hb_001180_010--Hb_048476_140 Hb_001180_010--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001180_010--Hb_002701_070 Hb_005276_070 Hb_005276_070 Hb_002662_110--Hb_005276_070 Hb_000612_090 Hb_000612_090 Hb_002662_110--Hb_000612_090 Hb_003416_020 Hb_003416_020 Hb_002662_110--Hb_003416_020 Hb_000679_080 Hb_000679_080 Hb_002662_110--Hb_000679_080 Hb_032631_030 Hb_032631_030 Hb_002662_110--Hb_032631_030 Hb_000465_410--Hb_002701_070 Hb_000465_410--Hb_001544_050 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_000749_260 Hb_000749_260 Hb_000465_410--Hb_000749_260 Hb_000390_210 Hb_000390_210 Hb_001544_050--Hb_000390_210 Hb_001544_050--Hb_002701_070 Hb_001544_050--Hb_000749_260 Hb_002078_390 Hb_002078_390 Hb_000417_050--Hb_002078_390 Hb_000417_050--Hb_002662_110 Hb_001677_040 Hb_001677_040 Hb_000417_050--Hb_001677_040 Hb_000622_050 Hb_000622_050 Hb_000417_050--Hb_000622_050 Hb_001357_050 Hb_001357_050 Hb_000417_050--Hb_001357_050 Hb_004855_020 Hb_004855_020 Hb_000207_350--Hb_004855_020 Hb_001104_150 Hb_001104_150 Hb_000207_350--Hb_001104_150 Hb_001123_310 Hb_001123_310 Hb_000207_350--Hb_001123_310 Hb_010868_040 Hb_010868_040 Hb_000207_350--Hb_010868_040 Hb_010381_040 Hb_010381_040 Hb_000207_350--Hb_010381_040 Hb_005568_020 Hb_005568_020 Hb_000207_350--Hb_005568_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14946 6.35803 45.9265 40.4157 1.68252 3.87646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62156 1.35558 3.22662 7.97833 38.2253

CAGE analysis